{"id":"https://openalex.org/W4394011456","doi":"https://doi.org/10.1007/s11047-023-09971-0","title":"Self-replication via tile self-assembly","display_name":"Self-replication via tile self-assembly","publication_year":2024,"publication_date":"2024-04-06","ids":{"openalex":"https://openalex.org/W4394011456","doi":"https://doi.org/10.1007/s11047-023-09971-0"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-023-09971-0","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s11047-023-09971-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-023-09971-0.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s11047-023-09971-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019136023","display_name":"Andrew Alseth","orcid":"https://orcid.org/0000-0002-0055-0788"},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Alseth","raw_affiliation_strings":["Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, USA"],"raw_orcid":"https://orcid.org/0000-0002-0055-0788","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, USA","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018618790","display_name":"Daniel Hader","orcid":null},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Hader","raw_affiliation_strings":["Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, USA","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078778273","display_name":"Matthew J. Patitz","orcid":"https://orcid.org/0000-0001-9287-4028"},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew J. Patitz","raw_affiliation_strings":["Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Computer Engineering, University of Arkansas, Fayetteville, USA","institution_ids":["https://openalex.org/I78715868"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":{"value":2290,"currency":"EUR","value_usd":2890},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04664758,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"3","first_page":"497","last_page":"530"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12784","display_name":"Modular Robots and Swarm Intelligence","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/replication","display_name":"Replication (statistics)","score":0.7886370420455933},{"id":"https://openalex.org/keywords/tile","display_name":"Tile","score":0.7729875445365906},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5946078300476074},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5786746740341187},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3964834213256836},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13963988423347473},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.12450560927391052}],"concepts":[{"id":"https://openalex.org/C12590798","wikidata":"https://www.wikidata.org/wiki/Q3933199","display_name":"Replication (statistics)","level":2,"score":0.7886370420455933},{"id":"https://openalex.org/C2780728851","wikidata":"https://www.wikidata.org/wiki/Q468402","display_name":"Tile","level":2,"score":0.7729875445365906},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5946078300476074},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5786746740341187},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3964834213256836},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13963988423347473},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.12450560927391052},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s11047-023-09971-0","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s11047-023-09971-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-023-09971-0.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmh:oai:scholarworks.uark.edu:cscepub-1066","is_oa":true,"landing_page_url":"https://scholarworks.uark.edu/cscepub/66","pdf_url":null,"source":{"id":"https://openalex.org/S2764830181","display_name":"Journal of the Arkansas Academy of Science","issn_l":"2326-0491","issn":["2326-0491","2326-0505"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320103","host_organization_name":"Arkansas Academy of Science","host_organization_lineage":["https://openalex.org/P4310320103"],"host_organization_lineage_names":["Arkansas Academy of Science"],"type":"journal"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Science and Computer Engineering Faculty Publications and Presentations","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1007/s11047-023-09971-0","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s11047-023-09971-0","pdf_url":"https://link.springer.com/content/pdf/10.1007/s11047-023-09971-0.pdf","source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1472158907","display_name":null,"funder_award_id":"CAREER-1553166","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G579362652","display_name":"CAREER:  Bridging the gap between theoretical and experimental self-assembly through computational modeling","funder_award_id":"1553166","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4394011456.pdf"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W15813826","https://openalex.org/W30861034","https://openalex.org/W1530081929","https://openalex.org/W1555232400","https://openalex.org/W1604076830","https://openalex.org/W1679117800","https://openalex.org/W1760628847","https://openalex.org/W1760837217","https://openalex.org/W1879557050","https://openalex.org/W1948499615","https://openalex.org/W1972005206","https://openalex.org/W1975760509","https://openalex.org/W1983241546","https://openalex.org/W1990819744","https://openalex.org/W1993277918","https://openalex.org/W2000567812","https://openalex.org/W2005615084","https://openalex.org/W2013397449","https://openalex.org/W2050604952","https://openalex.org/W2052564720","https://openalex.org/W2064143748","https://openalex.org/W2070783600","https://openalex.org/W2073933131","https://openalex.org/W2075031385","https://openalex.org/W2084408879","https://openalex.org/W2086507196","https://openalex.org/W2103409481","https://openalex.org/W2122894525","https://openalex.org/W2124177512","https://openalex.org/W2135520597","https://openalex.org/W2139438329","https://openalex.org/W2148219472","https://openalex.org/W2159104917","https://openalex.org/W2228543233","https://openalex.org/W2264541619","https://openalex.org/W2516211320","https://openalex.org/W2567970463","https://openalex.org/W2591786616","https://openalex.org/W2784847360","https://openalex.org/W2784892914","https://openalex.org/W2905223430","https://openalex.org/W2915027573","https://openalex.org/W2921499419","https://openalex.org/W2950597393","https://openalex.org/W2963667581","https://openalex.org/W3003022809","https://openalex.org/W3021431670","https://openalex.org/W3158449189","https://openalex.org/W3202073830","https://openalex.org/W4212850904","https://openalex.org/W4249921770"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2114959296","https://openalex.org/W38346124","https://openalex.org/W2502442966","https://openalex.org/W2138666621","https://openalex.org/W2383936314","https://openalex.org/W1992771654","https://openalex.org/W2022661278","https://openalex.org/W2169667823","https://openalex.org/W1914896963"],"abstract_inverted_index":{"Abstract":[0],"In":[1],"this":[2,75,239],"paper":[3],"we":[4,81,217],"present":[5,82,219],"a":[6,17,83,113,143,176,220],"model":[7,20,77],"containing":[8],"modifications":[9,38],"to":[10,43,49,57,60,100,174,208,226,242],"the":[11,32,45,70,78,96,109,121,150,155,163,170,187,194,198,201,209,214,229,232,254,266],"Signal-passing":[12],"Tile":[13],"Assembly":[14],"Model":[15],"(STAM),":[16],"tile-based":[18],"self-assembly":[19,225],"whose":[21],"tiles":[22,48,56,65],"are":[23,90,206,241],"capable":[24,91,249],"of":[25,34,40,47,66,85,92,120,149,189,191,193,200,211,231,238,246,250,256,268],"activating":[26],"and":[27,63,80,141,184],"deactivating":[28],"glues":[29],"based":[30],"on":[31,162],"binding":[33],"other":[35,164],"glues.":[36],"These":[37],"consist":[39],"an":[41],"extension":[42],"3D,":[44],"ability":[46],"form":[50,175],"\u201cflexible\u201d":[51],"bonds":[52],"that":[53,89],"allow":[54],"bound":[55],"rotate":[58],"relative":[59],"each":[61],"other,":[62],"allowing":[64],"multiple":[67],"shapes":[68],"within":[69,87],"same":[71],"system.":[72],"We":[73],"call":[74],"new":[76],"STAM*,":[79],"series":[84],"constructions":[86,205],"it":[88],"self-replicating":[93,251],"behavior.":[94],"Namely,":[95],"input":[97,159],"seed":[98],"assemblies":[99,192],"our":[101],"STAM*":[102],"systems":[103,248],"can":[104,117,166],"encode":[105],"either":[106],"\u201cgenomes\u201d":[107],"specifying":[108],"instructions":[110,125],"for":[111,133,203],"building":[112],"target":[114,122,135,156,160,195,215],"shape,":[115,216],"or":[116],"be":[118,167],"copies":[119,148,190],"shape":[123,136],"with":[124,253],"built":[126],"in.":[127],"A":[128],"universal":[129,171],"tile":[130,172],"set":[131,173],"exists":[132],"any":[134],"(at":[137],"scale":[138],"factor":[139],"2),":[140],"from":[142],"genome":[144,151,177],"assembly":[145],"creates":[146],"infinite":[147],"as":[152,154,262,264],"well":[153,263],"shape.":[157,196],"An":[158],"structure,":[161],"hand,":[165],"\u201cdeconstructed\u201d":[168],"by":[169],"encoding":[178],"it,":[179],"which":[180,222],"will":[181],"then":[182],"replicate":[183],"also":[185,218],"initiate":[186],"growth":[188],"Since":[197],"lengths":[199],"genomes":[202,233],"these":[204],"proportional":[207],"number":[210],"points":[212],"in":[213,260],"replicator":[221],"utilizes":[223],"hierarchical":[224],"greatly":[227],"reduce":[228],"size":[230],"required.":[234],"The":[235],"main":[236],"goals":[237],"work":[240],"examine":[243],"minimal":[244],"requirements":[245],"self-assembling":[247],"behavior,":[252],"aim":[255],"better":[257],"understanding":[258,265],"self-replication":[259],"nature":[261],"complexity":[267],"mimicking":[269],"it.":[270]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
