{"id":"https://openalex.org/W2990941195","doi":"https://doi.org/10.1007/s11047-019-09776-0","title":"Transcript design problem of oritatami systems","display_name":"Transcript design problem of oritatami systems","publication_year":2019,"publication_date":"2019-11-28","ids":{"openalex":"https://openalex.org/W2990941195","doi":"https://doi.org/10.1007/s11047-019-09776-0","mag":"2990941195"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-019-09776-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-019-09776-0","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077698683","display_name":"Yo-Sub Han","orcid":"https://orcid.org/0000-0002-7211-6657"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yo-Sub Han","raw_affiliation_strings":["Department of Computer Science, Yonsei University, 50 Yonsei-Ro, Seodaemum-Gu, Seoul, 03722, Republic of Korea","Department of Computer Science, Yonsei University, Seoul, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yonsei University, 50 Yonsei-Ro, Seodaemum-Gu, Seoul, 03722, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]},{"raw_affiliation_string":"Department of Computer Science, Yonsei University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053793605","display_name":"Hwee Kim","orcid":"https://orcid.org/0000-0001-9915-9756"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hwee Kim","raw_affiliation_strings":["Department of Mathematics and Statistics, University of South Florida, 4202 E. Fowler Ave., Tampa, FL, 33620, USA","Department of Mathematics and Statistics, University of South Florida, Tampa, USA"],"raw_orcid":"https://orcid.org/0000-0001-9915-9756","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of South Florida, 4202 E. Fowler Ave., Tampa, FL, 33620, USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Mathematics and Statistics, University of South Florida, Tampa, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002387043","display_name":"Shinnosuke Seki","orcid":"https://orcid.org/0000-0002-0276-3322"},"institutions":[{"id":"https://openalex.org/I20529979","display_name":"University of Electro-Communications","ror":"https://ror.org/02x73b849","country_code":"JP","type":"education","lineage":["https://openalex.org/I20529979"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shinnosuke Seki","raw_affiliation_strings":["Department of Computer and Network Engineering, University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, Tokyo, 1828585, Japan","Department of Computer and Network Engineering, University of Electro-Communications, Chofu, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Network Engineering, University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, Tokyo, 1828585, Japan","institution_ids":["https://openalex.org/I20529979"]},{"raw_affiliation_string":"Department of Computer and Network Engineering, University of Electro-Communications, Chofu, Japan","institution_ids":["https://openalex.org/I20529979"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053793605"],"corresponding_institution_ids":["https://openalex.org/I2613432"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":0.0759,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.44033646,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"19","issue":"2","first_page":"323","last_page":"335"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.7409032583236694},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6046882271766663},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5659953355789185},{"id":"https://openalex.org/keywords/phenomenon","display_name":"Phenomenon","score":0.5595690608024597},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5362350940704346},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5219777822494507},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4847854971885681},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.40069738030433655},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35855966806411743},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3349260687828064},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2525199353694916},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1779249608516693},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1555585265159607},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14795073866844177},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1322138011455536}],"concepts":[{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.7409032583236694},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6046882271766663},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5659953355789185},{"id":"https://openalex.org/C50335755","wikidata":"https://www.wikidata.org/wiki/Q483247","display_name":"Phenomenon","level":2,"score":0.5595690608024597},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5362350940704346},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5219777822494507},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4847854971885681},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.40069738030433655},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35855966806411743},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3349260687828064},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2525199353694916},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1779249608516693},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1555585265159607},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14795073866844177},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1322138011455536},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s11047-019-09776-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-019-09776-0","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1038846061","display_name":"Practical design of molecular self-assembly systems due to cotranscriptional folding and optimization","funder_award_id":"16H05854","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1461356618","display_name":null,"funder_award_id":"DMS1764406","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2020729107","display_name":"Intrinsic universality of co-transcriptional folding","funder_award_id":"20K11672","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4256783966","display_name":null,"funder_award_id":"2018R1D1A1A09084107","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G4503601948","display_name":null,"funder_award_id":"CCF-1526485","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G503211394","display_name":null,"funder_award_id":"R01 GM109459","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7255220517","display_name":null,"funder_award_id":"2017K2A9A2A08000270","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G7444898818","display_name":null,"funder_award_id":"594594","funder_id":"https://openalex.org/F4320306164","funder_display_name":"Simons Foundation"},{"id":"https://openalex.org/G8066885682","display_name":null,"funder_award_id":"YB29004","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8987587577","display_name":"Minimization of universal oritatami system and its limit","funder_award_id":"18K19779","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306164","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1543796220","https://openalex.org/W1984308317","https://openalex.org/W1991984734","https://openalex.org/W2013284377","https://openalex.org/W2498333024","https://openalex.org/W2523042949","https://openalex.org/W2533314863","https://openalex.org/W2561599208","https://openalex.org/W2561675875","https://openalex.org/W2620667968","https://openalex.org/W2748504058","https://openalex.org/W2772803310","https://openalex.org/W2892264964","https://openalex.org/W2900260115","https://openalex.org/W2944550477","https://openalex.org/W2963999695","https://openalex.org/W4285719527","https://openalex.org/W4289421929"],"related_works":["https://openalex.org/W4300450609","https://openalex.org/W4386931570","https://openalex.org/W2391010541","https://openalex.org/W2357367123","https://openalex.org/W4388930439","https://openalex.org/W2387276901","https://openalex.org/W2385953334","https://openalex.org/W2351303360","https://openalex.org/W3134118520","https://openalex.org/W2349223072"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
