{"id":"https://openalex.org/W1971913602","doi":"https://doi.org/10.1007/s11047-013-9392-7","title":"Modeling scalable pattern generation in DNA reaction networks","display_name":"Modeling scalable pattern generation in DNA reaction networks","publication_year":2013,"publication_date":"2013-08-31","ids":{"openalex":"https://openalex.org/W1971913602","doi":"https://doi.org/10.1007/s11047-013-9392-7","mag":"1971913602","pmid":"https://pubmed.ncbi.nlm.nih.gov/25506295"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-013-9392-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-013-9392-7","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4261192","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025306342","display_name":"Peter B. Allen","orcid":"https://orcid.org/0000-0003-2461-3285"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peter B. Allen","raw_affiliation_strings":["University of Texas at Austin, Austin, Tx, USA","University of Texas at Austin, Austin, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas at Austin, Austin, Tx, USA","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"University of Texas at Austin, Austin, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100329841","display_name":"Xi Chen","orcid":"https://orcid.org/0000-0001-6394-9967"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xi Chen","raw_affiliation_strings":["University of Texas at Austin, Austin, Tx, USA","University of Texas at Austin, Austin, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas at Austin, Austin, Tx, USA","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"University of Texas at Austin, Austin, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014078374","display_name":"Zack B. Simpson","orcid":null},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zack B. Simpson","raw_affiliation_strings":["University of Texas at Austin, Austin, Tx, USA","University of Texas at Austin, Austin, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas at Austin, Austin, Tx, USA","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"University of Texas at Austin, Austin, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089627980","display_name":"Andrew D. Ellington","orcid":"https://orcid.org/0000-0001-6246-5338"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew D. Ellington","raw_affiliation_strings":["University of Texas at Austin, Austin, Tx, USA","University of Texas at Austin, Austin, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas at Austin, Austin, Tx, USA","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"University of Texas at Austin, Austin, USA","institution_ids":["https://openalex.org/I86519309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025306342"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.1497,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.55485994,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"13","issue":"4","first_page":"583","last_page":"595"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5893833637237549},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5636880397796631},{"id":"https://openalex.org/keywords/reaction\u2013diffusion-system","display_name":"Reaction\u2013diffusion system","score":0.5340180993080139},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5006198883056641},{"id":"https://openalex.org/keywords/complementarity","display_name":"Complementarity (molecular biology)","score":0.4216080904006958},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.41627538204193115},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3300560712814331},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32744836807250977},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2418299913406372},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17343607544898987},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12666991353034973},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.08825775980949402}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5893833637237549},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5636880397796631},{"id":"https://openalex.org/C121231716","wikidata":"https://www.wikidata.org/wiki/Q901210","display_name":"Reaction\u2013diffusion system","level":2,"score":0.5340180993080139},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5006198883056641},{"id":"https://openalex.org/C202269582","wikidata":"https://www.wikidata.org/wiki/Q2644277","display_name":"Complementarity (molecular biology)","level":2,"score":0.4216080904006958},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.41627538204193115},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3300560712814331},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32744836807250977},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2418299913406372},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17343607544898987},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12666991353034973},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.08825775980949402},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/s11047-013-9392-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-013-9392-7","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmid:25506295","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25506295","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural computing","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.401.5238","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.401.5238","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://mitpress.mit.edu/sites/default/files/titles/content/alife13/978-0-262-31050-5-ch058.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4261192","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4261192","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4261192","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4261192","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nat Comput","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320306196","display_name":"Welch Foundation","ror":"https://ror.org/00np6vq88"},{"id":"https://openalex.org/F4320338388","display_name":"Eurostars","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1553090457","https://openalex.org/W1558276645","https://openalex.org/W1614862817","https://openalex.org/W1980301976","https://openalex.org/W1980661496","https://openalex.org/W1982088462","https://openalex.org/W1991111225","https://openalex.org/W1998988220","https://openalex.org/W1999585044","https://openalex.org/W2000804241","https://openalex.org/W2008626444","https://openalex.org/W2009095852","https://openalex.org/W2017116537","https://openalex.org/W2017296776","https://openalex.org/W2024748736","https://openalex.org/W2030294802","https://openalex.org/W2032619460","https://openalex.org/W2075031385","https://openalex.org/W2080851327","https://openalex.org/W2082931152","https://openalex.org/W2092424552","https://openalex.org/W2102699655","https://openalex.org/W2106132690","https://openalex.org/W2112532082","https://openalex.org/W2112636327","https://openalex.org/W2126961173","https://openalex.org/W2138071323","https://openalex.org/W2138336686","https://openalex.org/W2138753036","https://openalex.org/W2139452439","https://openalex.org/W2140261464","https://openalex.org/W2141478443","https://openalex.org/W2143368326","https://openalex.org/W2165285607","https://openalex.org/W2169033535","https://openalex.org/W2186876778","https://openalex.org/W2285458529","https://openalex.org/W2332242414","https://openalex.org/W3005108296"],"related_works":["https://openalex.org/W2521519254","https://openalex.org/W3139833644","https://openalex.org/W3123110765","https://openalex.org/W4383553409","https://openalex.org/W2212953222","https://openalex.org/W2104948296","https://openalex.org/W1735800226","https://openalex.org/W4285172739","https://openalex.org/W3123208392","https://openalex.org/W2073089361"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
