{"id":"https://openalex.org/W2115241253","doi":"https://doi.org/10.1007/s11047-013-9391-8","title":"Simulating a burnt-bridges DNA motor with a coarse-grained DNA model","display_name":"Simulating a burnt-bridges DNA motor with a coarse-grained DNA model","publication_year":2013,"publication_date":"2013-08-29","ids":{"openalex":"https://openalex.org/W2115241253","doi":"https://doi.org/10.1007/s11047-013-9391-8","mag":"2115241253"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-013-9391-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-013-9391-8","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1212.4536","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Petr \u0160ulc","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Petr \u0160ulc","raw_affiliation_strings":["Rudolf Peierls Centre for Theoretical Physics, University of Oxford, 1 Keble Road, Oxford, OX1 3NP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rudolf Peierls Centre for Theoretical Physics, University of Oxford, 1 Keble Road, Oxford, OX1 3NP, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Thomas E. Ouldridge","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas E. Ouldridge","raw_affiliation_strings":["Rudolf Peierls Centre for Theoretical Physics, University of Oxford, 1 Keble Road, Oxford, OX1 3NP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rudolf Peierls Centre for Theoretical Physics, University of Oxford, 1 Keble Road, Oxford, OX1 3NP, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Flavio Romano","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Flavio Romano","raw_affiliation_strings":["Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3QZ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3QZ, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jonathan P. K. Doye","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan P. K. Doye","raw_affiliation_strings":["Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3QZ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford, OX1 3QZ, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":null,"display_name":"Ard A. Louis","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ard A. Louis","raw_affiliation_strings":["Rudolf Peierls Centre for Theoretical Physics, University of Oxford, 1 Keble Road, Oxford, OX1 3NP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rudolf Peierls Centre for Theoretical Physics, University of Oxford, 1 Keble Road, Oxford, OX1 3NP, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":1.3465,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.80691773,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"4","first_page":"535","last_page":"547"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.4334999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.4334999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.23669999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.23070000112056732,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.6531000137329102},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5795000195503235},{"id":"https://openalex.org/keywords/molecular-motor","display_name":"Molecular motor","score":0.5569000244140625},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.5449000000953674},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5116999745368958},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.41929998993873596}],"concepts":[{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.6531000137329102},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5795999765396118},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5795000195503235},{"id":"https://openalex.org/C160408235","wikidata":"https://www.wikidata.org/wiki/Q423905","display_name":"Molecular motor","level":2,"score":0.5569000244140625},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5537999868392944},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.5449000000953674},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5116999745368958},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.41929998993873596},{"id":"https://openalex.org/C89992363","wikidata":"https://www.wikidata.org/wiki/Q5961558","display_name":"Track (disk drive)","level":2,"score":0.41920000314712524},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3483000099658966},{"id":"https://openalex.org/C2988540567","wikidata":"https://www.wikidata.org/wiki/Q12070446","display_name":"Model system","level":2,"score":0.3231000006198883},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.31130000948905945},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.3050999939441681},{"id":"https://openalex.org/C133731056","wikidata":"https://www.wikidata.org/wiki/Q4917288","display_name":"Control engineering","level":1,"score":0.2896000146865845},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.2720000147819519},{"id":"https://openalex.org/C191961535","wikidata":"https://www.wikidata.org/wiki/Q2360205","display_name":"A-DNA","level":3,"score":0.2651999890804291}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s11047-013-9391-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-013-9391-8","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:1212.4536","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1212.4536","pdf_url":"https://arxiv.org/pdf/1212.4536","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:iris.unive.it:10278/3673817","is_oa":false,"landing_page_url":"http://hdl.handle.net/10278/3673817","pdf_url":null,"source":{"id":"https://openalex.org/S4306402336","display_name":"ARCA (Universit\u00e0 Ca' Foscari Venezia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149461666","host_organization_name":"Ca' Foscari University of Venice","host_organization_lineage":["https://openalex.org/I149461666"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1212.4536","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1212.4536","pdf_url":"https://arxiv.org/pdf/1212.4536","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3609061361","display_name":null,"funder_award_id":"EP/I001352/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":77,"referenced_works":["https://openalex.org/W1520771520","https://openalex.org/W1567090568","https://openalex.org/W1590122046","https://openalex.org/W1617520624","https://openalex.org/W1908709458","https://openalex.org/W1964928696","https://openalex.org/W1966848207","https://openalex.org/W1974114013","https://openalex.org/W1975679096","https://openalex.org/W1976308393","https://openalex.org/W1977312644","https://openalex.org/W1978309556","https://openalex.org/W1978809492","https://openalex.org/W1980301976","https://openalex.org/W1983874017","https://openalex.org/W1985371657","https://openalex.org/W1985827444","https://openalex.org/W1986292487","https://openalex.org/W1986302333","https://openalex.org/W1989813275","https://openalex.org/W1991159148","https://openalex.org/W1993177346","https://openalex.org/W1997043642","https://openalex.org/W2005632053","https://openalex.org/W2005637794","https://openalex.org/W2007147905","https://openalex.org/W2007494784","https://openalex.org/W2011802753","https://openalex.org/W2013676609","https://openalex.org/W2013779383","https://openalex.org/W2024949907","https://openalex.org/W2026285337","https://openalex.org/W2027838042","https://openalex.org/W2034423875","https://openalex.org/W2038125628","https://openalex.org/W2050103377","https://openalex.org/W2050630660","https://openalex.org/W2053783019","https://openalex.org/W2054739661","https://openalex.org/W2058898182","https://openalex.org/W2059985845","https://openalex.org/W2060072762","https://openalex.org/W2062020329","https://openalex.org/W2062514976","https://openalex.org/W2065996552","https://openalex.org/W2072687635","https://openalex.org/W2082015621","https://openalex.org/W2084408879","https://openalex.org/W2084798466","https://openalex.org/W2087518856","https://openalex.org/W2087672399","https://openalex.org/W2090708401","https://openalex.org/W2098294861","https://openalex.org/W2103409481","https://openalex.org/W2112154906","https://openalex.org/W2112333437","https://openalex.org/W2117640700","https://openalex.org/W2119635496","https://openalex.org/W2122199548","https://openalex.org/W2125371586","https://openalex.org/W2126466006","https://openalex.org/W2126961173","https://openalex.org/W2127730612","https://openalex.org/W2135995702","https://openalex.org/W2141994754","https://openalex.org/W2145183488","https://openalex.org/W2146238633","https://openalex.org/W2148775102","https://openalex.org/W2150963761","https://openalex.org/W2153686627","https://openalex.org/W2153700418","https://openalex.org/W2158346543","https://openalex.org/W2158778875","https://openalex.org/W2164215798","https://openalex.org/W2169767423","https://openalex.org/W4210691609","https://openalex.org/W4211177570"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2016-06-24T00:00:00"}
