{"id":"https://openalex.org/W2013911710","doi":"https://doi.org/10.1007/s11047-010-9180-6","title":"Petri nets for modelling metabolic pathways: a survey","display_name":"Petri nets for modelling metabolic pathways: a survey","publication_year":2010,"publication_date":"2010-02-23","ids":{"openalex":"https://openalex.org/W2013911710","doi":"https://doi.org/10.1007/s11047-010-9180-6","mag":"2013911710"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-010-9180-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-010-9180-6","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10278/23014","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031056947","display_name":"Paolo Baldan","orcid":"https://orcid.org/0000-0001-9357-5599"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Paolo Baldan","raw_affiliation_strings":["Dipartimento di Matematica Pura e Applicata, Universit\u00e0 di Padova, via Trieste 63, 35121, Padova, Italy","Dipartimento di Matematica Pura e Applicata, Universit\u00e1 di Padova, Padova, Italy 35121#TAB#"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Matematica Pura e Applicata, Universit\u00e0 di Padova, via Trieste 63, 35121, Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Dipartimento di Matematica Pura e Applicata, Universit\u00e1 di Padova, Padova, Italy 35121#TAB#","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030853031","display_name":"Nicoletta Cocco","orcid":null},"institutions":[{"id":"https://openalex.org/I149461666","display_name":"Ca' Foscari University of Venice","ror":"https://ror.org/04yzxz566","country_code":"IT","type":"education","lineage":["https://openalex.org/I149461666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Nicoletta Cocco","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 Ca\u2019 Foscari di Venezia, via Torino 155, 30172, Venezia Mestre, Italy","Dipartimento di Informatica, Universit\u00e0 Ca' Foscari di Venezia, Venezia Mestre, Italy 30172#TAB#"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 Ca\u2019 Foscari di Venezia, via Torino 155, 30172, Venezia Mestre, Italy","institution_ids":["https://openalex.org/I149461666"]},{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 Ca' Foscari di Venezia, Venezia Mestre, Italy 30172#TAB#","institution_ids":["https://openalex.org/I149461666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108115683","display_name":"Andrea Marin","orcid":null},"institutions":[{"id":"https://openalex.org/I149461666","display_name":"Ca' Foscari University of Venice","ror":"https://ror.org/04yzxz566","country_code":"IT","type":"education","lineage":["https://openalex.org/I149461666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Marin","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 Ca\u2019 Foscari di Venezia, via Torino 155, 30172, Venezia Mestre, Italy","Dipartimento di Informatica, Universit\u00e0 Ca' Foscari di Venezia, Venezia Mestre, Italy 30172#TAB#"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 Ca\u2019 Foscari di Venezia, via Torino 155, 30172, Venezia Mestre, Italy","institution_ids":["https://openalex.org/I149461666"]},{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 Ca' Foscari di Venezia, Venezia Mestre, Italy 30172#TAB#","institution_ids":["https://openalex.org/I149461666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058107550","display_name":"Marta Simeoni","orcid":"https://orcid.org/0000-0003-2702-3504"},"institutions":[{"id":"https://openalex.org/I149461666","display_name":"Ca' Foscari University of Venice","ror":"https://ror.org/04yzxz566","country_code":"IT","type":"education","lineage":["https://openalex.org/I149461666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marta Simeoni","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 Ca\u2019 Foscari di Venezia, via Torino 155, 30172, Venezia Mestre, Italy","Dipartimento di Informatica, Universit\u00e0 Ca' Foscari di Venezia, Venezia Mestre, Italy 30172#TAB#"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 Ca\u2019 Foscari di Venezia, via Torino 155, 30172, Venezia Mestre, Italy","institution_ids":["https://openalex.org/I149461666"]},{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 Ca' Foscari di Venezia, Venezia Mestre, Italy 30172#TAB#","institution_ids":["https://openalex.org/I149461666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031056947"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":4.3184,"has_fulltext":false,"cited_by_count":112,"citation_normalized_percentile":{"value":0.94963935,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"9","issue":"4","first_page":"955","last_page":"989"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.9554764628410339},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7286211848258972},{"id":"https://openalex.org/keywords/process-architecture","display_name":"Process architecture","score":0.5805870890617371},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.565474271774292},{"id":"https://openalex.org/keywords/petri-dish","display_name":"Petri dish","score":0.5516088604927063},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5259333252906799},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.4637809991836548},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4474645256996155},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19630539417266846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13316446542739868},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0993766188621521}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.9554764628410339},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7286211848258972},{"id":"https://openalex.org/C136155141","wikidata":"https://www.wikidata.org/wiki/Q7247260","display_name":"Process architecture","level":3,"score":0.5805870890617371},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.565474271774292},{"id":"https://openalex.org/C146763376","wikidata":"https://www.wikidata.org/wiki/Q81714","display_name":"Petri dish","level":2,"score":0.5516088604927063},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5259333252906799},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.4637809991836548},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4474645256996155},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19630539417266846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13316446542739868},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0993766188621521},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.0},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s11047-010-9180-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-010-9180-6","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmh:oai:iris.unive.it:10278/23014","is_oa":true,"landing_page_url":"http://hdl.handle.net/10278/23014","pdf_url":null,"source":{"id":"https://openalex.org/S4306402336","display_name":"ARCA (Universit\u00e0 Ca' Foscari Venezia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149461666","host_organization_name":"Ca' Foscari University of Venice","host_organization_lineage":["https://openalex.org/I149461666"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:www.research.unipd.it:11577/2422349","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/2422349","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:iris.unive.it:10278/23014","is_oa":true,"landing_page_url":"http://hdl.handle.net/10278/23014","pdf_url":null,"source":{"id":"https://openalex.org/S4306402336","display_name":"ARCA (Universit\u00e0 Ca' Foscari Venezia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149461666","host_organization_name":"Ca' Foscari University of Venice","host_organization_lineage":["https://openalex.org/I149461666"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":106,"referenced_works":["https://openalex.org/W12256183","https://openalex.org/W98222776","https://openalex.org/W190590157","https://openalex.org/W317210108","https://openalex.org/W324637047","https://openalex.org/W1481465901","https://openalex.org/W1489737525","https://openalex.org/W1497489765","https://openalex.org/W1499965417","https://openalex.org/W1500925016","https://openalex.org/W1505489763","https://openalex.org/W1525816981","https://openalex.org/W1534850333","https://openalex.org/W1535437554","https://openalex.org/W1544455702","https://openalex.org/W1551214605","https://openalex.org/W1563476066","https://openalex.org/W1570906230","https://openalex.org/W1585402899","https://openalex.org/W1592257313","https://openalex.org/W1599545777","https://openalex.org/W1606784130","https://openalex.org/W1642162696","https://openalex.org/W1664954303","https://openalex.org/W1740816575","https://openalex.org/W1758395617","https://openalex.org/W1759712729","https://openalex.org/W1759934887","https://openalex.org/W1786236181","https://openalex.org/W1822695616","https://openalex.org/W1825536659","https://openalex.org/W1847434759","https://openalex.org/W1888236768","https://openalex.org/W1964012101","https://openalex.org/W1971135164","https://openalex.org/W1971231744","https://openalex.org/W1978486653","https://openalex.org/W1984208007","https://openalex.org/W1986755980","https://openalex.org/W1987050978","https://openalex.org/W1992306474","https://openalex.org/W1993980414","https://openalex.org/W1994656497","https://openalex.org/W1996109622","https://openalex.org/W1997893082","https://openalex.org/W1999916184","https://openalex.org/W2000312977","https://openalex.org/W2006477248","https://openalex.org/W2008435081","https://openalex.org/W2011835017","https://openalex.org/W2037442572","https://openalex.org/W2037614307","https://openalex.org/W2042801853","https://openalex.org/W2046760236","https://openalex.org/W2058221907","https://openalex.org/W2062245653","https://openalex.org/W2063465221","https://openalex.org/W2065381022","https://openalex.org/W2078734278","https://openalex.org/W2088488298","https://openalex.org/W2094524776","https://openalex.org/W2099039198","https://openalex.org/W2100486049","https://openalex.org/W2101011890","https://openalex.org/W2102263388","https://openalex.org/W2104855667","https://openalex.org/W2110012716","https://openalex.org/W2112332161","https://openalex.org/W2113355185","https://openalex.org/W2122792487","https://openalex.org/W2123060905","https://openalex.org/W2123610695","https://openalex.org/W2128276963","https://openalex.org/W2128601422","https://openalex.org/W2130687290","https://openalex.org/W2132232959","https://openalex.org/W2134784304","https://openalex.org/W2143784594","https://openalex.org/W2146367686","https://openalex.org/W2148895036","https://openalex.org/W2149325066","https://openalex.org/W2150153992","https://openalex.org/W2150700412","https://openalex.org/W2152599613","https://openalex.org/W2155418451","https://openalex.org/W2161621619","https://openalex.org/W2165603655","https://openalex.org/W2166927282","https://openalex.org/W2169804422","https://openalex.org/W2169810918","https://openalex.org/W2170497814","https://openalex.org/W2390178871","https://openalex.org/W2394903686","https://openalex.org/W2462966030","https://openalex.org/W2483648461","https://openalex.org/W2891255201","https://openalex.org/W2940404124","https://openalex.org/W3021911166","https://openalex.org/W3155756270","https://openalex.org/W4206179858","https://openalex.org/W4234803542","https://openalex.org/W4240119503","https://openalex.org/W4241212268","https://openalex.org/W4249538237","https://openalex.org/W4285719527","https://openalex.org/W4299438414"],"related_works":["https://openalex.org/W1938017683","https://openalex.org/W2158814988","https://openalex.org/W1543378523","https://openalex.org/W2355954834","https://openalex.org/W2285444239","https://openalex.org/W2257573499","https://openalex.org/W2901841247","https://openalex.org/W2091260341","https://openalex.org/W597347111","https://openalex.org/W2064254377"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":8}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}