{"id":"https://openalex.org/W2039406052","doi":"https://doi.org/10.1007/s11047-009-9152-x","title":"Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks","display_name":"Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks","publication_year":2009,"publication_date":"2009-09-18","ids":{"openalex":"https://openalex.org/W2039406052","doi":"https://doi.org/10.1007/s11047-009-9152-x","mag":"2039406052"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-009-9152-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-009-9152-x","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002359152","display_name":"Wolfgang Marwan","orcid":"https://orcid.org/0000-0002-6311-5433"},"institutions":[{"id":"https://openalex.org/I4210127568","display_name":"Max Planck Institute for Dynamics of Complex Technical Systems","ror":"https://ror.org/030h7k016","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210127568"]},{"id":"https://openalex.org/I95793202","display_name":"Otto-von-Guericke-Universit\u00e4t Magdeburg","ror":"https://ror.org/00ggpsq73","country_code":"DE","type":"education","lineage":["https://openalex.org/I95793202"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Wolfgang Marwan","raw_affiliation_strings":["Magdeburg Centre for Systems Biology (MaCS), Otto-von-Guericke-Universit\u00e4t, Magdeburg, Germany","Max-Planck-Institut f\u00fcr Dynamik komplexer technischer Systeme, Sandtorstrasse 1, 39106, Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magdeburg Centre for Systems Biology (MaCS), Otto-von-Guericke-Universit\u00e4t, Magdeburg, Germany","institution_ids":["https://openalex.org/I95793202"]},{"raw_affiliation_string":"Max-Planck-Institut f\u00fcr Dynamik komplexer technischer Systeme, Sandtorstrasse 1, 39106, Magdeburg, Germany","institution_ids":["https://openalex.org/I4210127568"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048135620","display_name":"Annegret K. Wagler","orcid":"https://orcid.org/0000-0002-6055-1176"},"institutions":[{"id":"https://openalex.org/I95793202","display_name":"Otto-von-Guericke-Universit\u00e4t Magdeburg","ror":"https://ror.org/00ggpsq73","country_code":"DE","type":"education","lineage":["https://openalex.org/I95793202"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Annegret Wagler","raw_affiliation_strings":["Magdeburg Centre for Systems Biology (MaCS), Otto-von-Guericke-Universit\u00e4t, Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magdeburg Centre for Systems Biology (MaCS), Otto-von-Guericke-Universit\u00e4t, Magdeburg, Germany","institution_ids":["https://openalex.org/I95793202"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029637448","display_name":"Robert Weismantel","orcid":null},"institutions":[{"id":"https://openalex.org/I95793202","display_name":"Otto-von-Guericke-Universit\u00e4t Magdeburg","ror":"https://ror.org/00ggpsq73","country_code":"DE","type":"education","lineage":["https://openalex.org/I95793202"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Robert Weismantel","raw_affiliation_strings":["Magdeburg Centre for Systems Biology (MaCS), Otto-von-Guericke-Universit\u00e4t, Magdeburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Magdeburg Centre for Systems Biology (MaCS), Otto-von-Guericke-Universit\u00e4t, Magdeburg, Germany","institution_ids":["https://openalex.org/I95793202"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002359152"],"corresponding_institution_ids":["https://openalex.org/I4210127568","https://openalex.org/I95793202"],"apc_list":{"value":2890,"currency":"USD","value_usd":2890},"apc_paid":null,"fwci":1.5116,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.81253602,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"10","issue":"2","first_page":"639","last_page":"654"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.9042224287986755},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.7764748334884644},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7141630053520203},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.61532062292099},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5892056226730347},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5345358848571777},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4622959494590759},{"id":"https://openalex.org/keywords/process-architecture","display_name":"Process architecture","score":0.45682293176651},{"id":"https://openalex.org/keywords/stochastic-petri-net","display_name":"Stochastic Petri net","score":0.4480932354927063},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.43411219120025635},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3354027271270752},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.26419055461883545},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.25500598549842834},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20793285965919495},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09831959009170532},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09170645475387573}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.9042224287986755},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.7764748334884644},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7141630053520203},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.61532062292099},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5892056226730347},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5345358848571777},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4622959494590759},{"id":"https://openalex.org/C136155141","wikidata":"https://www.wikidata.org/wiki/Q7247260","display_name":"Process architecture","level":3,"score":0.45682293176651},{"id":"https://openalex.org/C197551870","wikidata":"https://www.wikidata.org/wiki/Q7617809","display_name":"Stochastic Petri net","level":3,"score":0.4480932354927063},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.43411219120025635},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3354027271270752},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.26419055461883545},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25500598549842834},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20793285965919495},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09831959009170532},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09170645475387573}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s11047-009-9152-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-009-9152-x","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmh:oai:pure.mpg.de:item_2154487","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0026-CE00-F","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Natural Computing","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W190590157","https://openalex.org/W249159571","https://openalex.org/W1505489763","https://openalex.org/W1544455702","https://openalex.org/W1563476066","https://openalex.org/W1574084679","https://openalex.org/W1592257313","https://openalex.org/W1740816575","https://openalex.org/W1966214340","https://openalex.org/W1984818254","https://openalex.org/W1986755980","https://openalex.org/W1989457548","https://openalex.org/W2000875416","https://openalex.org/W2018475238","https://openalex.org/W2047496194","https://openalex.org/W2063447902","https://openalex.org/W2063465221","https://openalex.org/W2078867842","https://openalex.org/W2102263388","https://openalex.org/W2104855667","https://openalex.org/W2128276963","https://openalex.org/W2131429754","https://openalex.org/W2148895036","https://openalex.org/W2169804422","https://openalex.org/W2169810918","https://openalex.org/W2412839122","https://openalex.org/W4240119503","https://openalex.org/W4256204310","https://openalex.org/W4300591351"],"related_works":["https://openalex.org/W1543378523","https://openalex.org/W2381491984","https://openalex.org/W2362023948","https://openalex.org/W2257573499","https://openalex.org/W2016989291","https://openalex.org/W2380620445","https://openalex.org/W2064254377","https://openalex.org/W2352499080","https://openalex.org/W1847176793","https://openalex.org/W2148229336"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
