{"id":"https://openalex.org/W2051706138","doi":"https://doi.org/10.1007/s11047-009-9151-y","title":"Petri net models for the semi-automatic construction of large scale biological networks","display_name":"Petri net models for the semi-automatic construction of large scale biological networks","publication_year":2009,"publication_date":"2009-09-11","ids":{"openalex":"https://openalex.org/W2051706138","doi":"https://doi.org/10.1007/s11047-009-9151-y","mag":"2051706138"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-009-9151-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-009-9151-y","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100423292","display_name":"Ming Chen","orcid":"https://orcid.org/0000-0002-9677-1699"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Chen","raw_affiliation_strings":["Bioinformatics Department, College of Life Sciences, Zhejiang University, Zijingang Campus, Hangzhou, 310058, China","Bioinformatics Department, College of Life Sciences, Zhejiang University, Hangzhou, China 310058#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, College of Life Sciences, Zhejiang University, Zijingang Campus, Hangzhou, 310058, China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Bioinformatics Department, College of Life Sciences, Zhejiang University, Hangzhou, China 310058#TAB#","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017809913","display_name":"Sridhar Hariharaputran","orcid":"https://orcid.org/0000-0002-9979-3244"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sridhar Hariharaputran","raw_affiliation_strings":["Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001882549","display_name":"Ralf Hofest\u00e4dt","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ralf Hofest\u00e4dt","raw_affiliation_strings":["Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044680921","display_name":"Benjamin Kormeier","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Benjamin Kormeier","raw_affiliation_strings":["Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081948453","display_name":"Sarah Spangardt","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sarah Spangardt","raw_affiliation_strings":["Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, 33615, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bioinformatics Department, Faculty of Technology, Bielefeld University, Bielefeld, Germany 33615","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5001882549"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":1.2324,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.78249962,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"10","issue":"3","first_page":"1077","last_page":"1097"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.9346510171890259},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8019217252731323},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.7455852627754211},{"id":"https://openalex.org/keywords/process-architecture","display_name":"Process architecture","score":0.6738159656524658},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.5425418615341187},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5278083086013794},{"id":"https://openalex.org/keywords/stochastic-petri-net","display_name":"Stochastic Petri net","score":0.5061563849449158},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4260699450969696},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.425857275724411},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.36352550983428955},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.208025723695755},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.13124364614486694},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10729268193244934}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.9346510171890259},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8019217252731323},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.7455852627754211},{"id":"https://openalex.org/C136155141","wikidata":"https://www.wikidata.org/wiki/Q7247260","display_name":"Process architecture","level":3,"score":0.6738159656524658},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.5425418615341187},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5278083086013794},{"id":"https://openalex.org/C197551870","wikidata":"https://www.wikidata.org/wiki/Q7617809","display_name":"Stochastic Petri net","level":3,"score":0.5061563849449158},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4260699450969696},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.425857275724411},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.36352550983428955},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.208025723695755},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.13124364614486694},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10729268193244934},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s11047-009-9151-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-009-9151-y","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmh:oai:pub.librecat.org:2326407","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2326407","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Chen M, Hariharaputran S, Hofest\u00e4dt R, Kormeier B, Spangardt S. Petri net models for the semi-automatic construction of large scale biological networks. &lt;em&gt;Natural Computing&lt;/em&gt;. 2011;10(3):1077-1097.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pub.uni-bielefeld.de:2408638","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/publication/2408638","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Chen M, Hariharaputran S, Hofest\u00e4dt R, Kormeier B, Spangardt S. Petri Net Models for the Semi-automatic Construction of Large Scale Biological Networks. &lt;em&gt;Natural Computing&lt;/em&gt;. 2009;10(3):1077-1097.","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323389","display_name":"Universit\u00e4t Bielefeld","ror":"https://ror.org/02hpadn98"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W12256183","https://openalex.org/W98222776","https://openalex.org/W156416472","https://openalex.org/W182549619","https://openalex.org/W190590157","https://openalex.org/W791148253","https://openalex.org/W1519328443","https://openalex.org/W1530920082","https://openalex.org/W1544455702","https://openalex.org/W1561267729","https://openalex.org/W1563476066","https://openalex.org/W1575085851","https://openalex.org/W1592257313","https://openalex.org/W1596212401","https://openalex.org/W1608205571","https://openalex.org/W1668625893","https://openalex.org/W1740816575","https://openalex.org/W1759934887","https://openalex.org/W1776634096","https://openalex.org/W1810934276","https://openalex.org/W1847434759","https://openalex.org/W1963861745","https://openalex.org/W1970150468","https://openalex.org/W1971224531","https://openalex.org/W1975954590","https://openalex.org/W1979565917","https://openalex.org/W1989993332","https://openalex.org/W1995077427","https://openalex.org/W2032619610","https://openalex.org/W2036614629","https://openalex.org/W2037442572","https://openalex.org/W2040890820","https://openalex.org/W2045478141","https://openalex.org/W2047496194","https://openalex.org/W2058409448","https://openalex.org/W2065381022","https://openalex.org/W2088842371","https://openalex.org/W2089372815","https://openalex.org/W2091821831","https://openalex.org/W2096988114","https://openalex.org/W2102653059","https://openalex.org/W2104855667","https://openalex.org/W2107782946","https://openalex.org/W2108654339","https://openalex.org/W2111973517","https://openalex.org/W2117364474","https://openalex.org/W2119412782","https://openalex.org/W2120615294","https://openalex.org/W2125820659","https://openalex.org/W2128276963","https://openalex.org/W2130479394","https://openalex.org/W2131067724","https://openalex.org/W2143883853","https://openalex.org/W2148357359","https://openalex.org/W2148895036","https://openalex.org/W2159482845","https://openalex.org/W2162505680","https://openalex.org/W2169804422","https://openalex.org/W2169810918","https://openalex.org/W2500539115","https://openalex.org/W2607004604","https://openalex.org/W4231824804","https://openalex.org/W4285719527","https://openalex.org/W4294216483","https://openalex.org/W4299438414"],"related_works":["https://openalex.org/W2355954834","https://openalex.org/W2037143823","https://openalex.org/W4251986095","https://openalex.org/W2168615635","https://openalex.org/W1990357312","https://openalex.org/W1497924817","https://openalex.org/W2048775824","https://openalex.org/W2274714293","https://openalex.org/W2051706138","https://openalex.org/W2061245977"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
