{"id":"https://openalex.org/W2008591003","doi":"https://doi.org/10.1007/s11047-008-9067-y","title":"Computation with finite stochastic chemical reaction networks","display_name":"Computation with finite stochastic chemical reaction networks","publication_year":2008,"publication_date":"2008-02-01","ids":{"openalex":"https://openalex.org/W2008591003","doi":"https://doi.org/10.1007/s11047-008-9067-y","mag":"2008591003"},"language":"en","primary_location":{"id":"doi:10.1007/s11047-008-9067-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-008-9067-y","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065095363","display_name":"David Soloveichik","orcid":"https://orcid.org/0000-0002-2585-4120"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David Soloveichik","raw_affiliation_strings":["Department of CNS, California Institute of Technology, Pasadena, CA, USA","Department of CNS, California Institute of Technology, Pasadena, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of CNS, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Department of CNS, California Institute of Technology, Pasadena, USA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011103736","display_name":"Matthew Cook","orcid":"https://orcid.org/0000-0002-3331-9363"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Matthew Cook","raw_affiliation_strings":["Institute of Neuroinformatics, ETH, Z\u00fcrich, Switzerland","Institute of Neuroinformatics, ETH Z\u00fcrich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Neuroinformatics, ETH, Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]},{"raw_affiliation_string":"Institute of Neuroinformatics, ETH Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000956443","display_name":"Erik Winfree","orcid":"https://orcid.org/0000-0002-5899-7523"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik Winfree","raw_affiliation_strings":["Department of CNS, California Institute of Technology, Pasadena, CA, USA","Departments of CS, CNS, and Bioengineering, California Institute of Technology, Pasadena, CA, USA","Department of CNS, California Institute of Technology, Pasadena, USA and Departments of CS, CNS, and Bioengineering, California Institute of Technology, Pasadena, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of CNS, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Departments of CS, CNS, and Bioengineering, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Department of CNS, California Institute of Technology, Pasadena, USA and Departments of CS, CNS, and Bioengineering, California Institute of Technology, Pasadena, USA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043861677","display_name":"Jehoshua Bruck","orcid":"https://orcid.org/0000-0001-8474-0812"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jehoshua Bruck","raw_affiliation_strings":["Department of CNS and EE, California Institute of Technology, Pasadena, CA, USA","Department of CNS, California Institute of Technology, Pasadena, CA, USA","Department of CNS, California Institute of Technology, Pasadena, USA and Department of CNS and EE, California Institute of Technology, Pasadena, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of CNS and EE, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Department of CNS, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Department of CNS, California Institute of Technology, Pasadena, USA and Department of CNS and EE, California Institute of Technology, Pasadena, USA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5065095363"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":3.6502,"has_fulltext":false,"cited_by_count":267,"citation_normalized_percentile":{"value":0.9335605,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"7","issue":"4","first_page":"615","last_page":"633"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.7101250290870667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6775606870651245},{"id":"https://openalex.org/keywords/theory-of-computation","display_name":"Theory of computation","score":0.6597100496292114},{"id":"https://openalex.org/keywords/turing","display_name":"Turing","score":0.6111272573471069},{"id":"https://openalex.org/keywords/turing-machine","display_name":"Turing machine","score":0.6047999262809753},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5346459746360779},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.5106802582740784},{"id":"https://openalex.org/keywords/logic-gate","display_name":"Logic gate","score":0.46080824732780457},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.315548300743103}],"concepts":[{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.7101250290870667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6775606870651245},{"id":"https://openalex.org/C24858836","wikidata":"https://www.wikidata.org/wiki/Q844718","display_name":"Theory of computation","level":2,"score":0.6597100496292114},{"id":"https://openalex.org/C9870796","wikidata":"https://www.wikidata.org/wiki/Q490481","display_name":"Turing","level":2,"score":0.6111272573471069},{"id":"https://openalex.org/C29248071","wikidata":"https://www.wikidata.org/wiki/Q163310","display_name":"Turing machine","level":3,"score":0.6047999262809753},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5346459746360779},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.5106802582740784},{"id":"https://openalex.org/C131017901","wikidata":"https://www.wikidata.org/wiki/Q170451","display_name":"Logic gate","level":2,"score":0.46080824732780457},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.315548300743103},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1007/s11047-008-9067-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s11047-008-9067-y","pdf_url":null,"source":{"id":"https://openalex.org/S149828480","display_name":"Natural Computing","issn_l":"1567-7818","issn":["1567-7818","1572-9796"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Natural Computing","raw_type":"journal-article"},{"id":"pmh:oai:authors.library.caltech.edu:26115","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechPARADISE:2007.ETR085","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Report or Paper"},{"id":"pmh:oai:authors.library.caltech.edu:27331","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20111020-132840264","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:doi:10.5167/uzh-17630","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.144.4745","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.144.4745","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.dna.caltech.edu/Papers/sCRN_computation_TR2007.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.381.4067","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.381.4067","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.paradise.caltech.edu/papers/etr_085_dec07.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.381.940","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.381.940","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.paradise.caltech.edu/papers/etr_085_sep07.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.93.9880","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.93.9880","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.paradise.caltech.edu/papers/etr085.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.7300000190734863}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W182470270","https://openalex.org/W1556001544","https://openalex.org/W1573401538","https://openalex.org/W1645305843","https://openalex.org/W1662868588","https://openalex.org/W1748501741","https://openalex.org/W1759632117","https://openalex.org/W1839356836","https://openalex.org/W1850807863","https://openalex.org/W1946177469","https://openalex.org/W1964928696","https://openalex.org/W1967107318","https://openalex.org/W1967668980","https://openalex.org/W1976443948","https://openalex.org/W1978319180","https://openalex.org/W1990903593","https://openalex.org/W1994584977","https://openalex.org/W2026697234","https://openalex.org/W2028613837","https://openalex.org/W2035868348","https://openalex.org/W2047206115","https://openalex.org/W2061970672","https://openalex.org/W2062802768","https://openalex.org/W2078119846","https://openalex.org/W2078734278","https://openalex.org/W2085061065","https://openalex.org/W2102787760","https://openalex.org/W2106001218","https://openalex.org/W2126700038","https://openalex.org/W2126794261","https://openalex.org/W2136289400","https://openalex.org/W2148456801","https://openalex.org/W2149158279","https://openalex.org/W2155418451","https://openalex.org/W2164055371","https://openalex.org/W2166633151","https://openalex.org/W2167154952","https://openalex.org/W2171280873","https://openalex.org/W4213329537","https://openalex.org/W4242957080","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2119244842","https://openalex.org/W2046587138","https://openalex.org/W4285436350","https://openalex.org/W4324016496","https://openalex.org/W2215138167","https://openalex.org/W4254404873","https://openalex.org/W4231495498","https://openalex.org/W2090113742","https://openalex.org/W4312201671","https://openalex.org/W2306527987"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":21},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":19},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":14}],"updated_date":"2026-05-11T08:15:01.531666","created_date":"2025-10-10T00:00:00"}
