{"id":"https://openalex.org/W2966515073","doi":"https://doi.org/10.1007/s10994-020-05882-8","title":"Embedding-based Silhouette community detection","display_name":"Embedding-based Silhouette community detection","publication_year":2020,"publication_date":"2020-07-27","ids":{"openalex":"https://openalex.org/W2966515073","doi":"https://doi.org/10.1007/s10994-020-05882-8","mag":"2966515073","pmid":"https://pubmed.ncbi.nlm.nih.gov/33191975"},"language":"en","primary_location":{"id":"doi:10.1007/s10994-020-05882-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10994-020-05882-8","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10994-020-05882-8.pdf","source":{"id":"https://openalex.org/S62148650","display_name":"Machine Learning","issn_l":"0885-6125","issn":["0885-6125","1573-0565"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10994-020-05882-8.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Bla\u017e \u0160krlj","orcid":"https://orcid.org/0000-0002-9916-8756"},"institutions":[{"id":"https://openalex.org/I3006985408","display_name":"Jo\u017eef Stefan Institute","ror":"https://ror.org/05060sz93","country_code":"SI","type":"facility","lineage":["https://openalex.org/I3006985408"]},{"id":"https://openalex.org/I4210113529","display_name":"Jo\u017eef Stefan International Postgraduate School","ror":"https://ror.org/01hdkb925","country_code":"SI","type":"education","lineage":["https://openalex.org/I4210113529"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Bla\u017e \u0160krlj","raw_affiliation_strings":["Jo\u017eef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia","Jo\u017eef Stefan International Postgraduate School, Jamova 39, 1000 Ljubljana, Slovenia"],"raw_orcid":"https://orcid.org/0000-0002-9916-8756","affiliations":[{"raw_affiliation_string":"Jo\u017eef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I3006985408"]},{"raw_affiliation_string":"Jo\u017eef Stefan International Postgraduate School, Jamova 39, 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210113529"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jan Kralj","orcid":null},"institutions":[{"id":"https://openalex.org/I3006985408","display_name":"Jo\u017eef Stefan Institute","ror":"https://ror.org/05060sz93","country_code":"SI","type":"facility","lineage":["https://openalex.org/I3006985408"]},{"id":"https://openalex.org/I4210135581","display_name":"Cosylab","ror":"https://ror.org/03qe0g959","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210135581"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Jan Kralj","raw_affiliation_strings":["CosyLab, Gerbi\u010deva ulica 64, 1000 Ljubljana, Slovenia","Jo\u017eef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CosyLab, Gerbi\u010deva ulica 64, 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210135581"]},{"raw_affiliation_string":"Jo\u017eef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I3006985408"]}]},{"author_position":"last","author":{"id":null,"display_name":"Nada Lavra\u010d","orcid":null},"institutions":[{"id":"https://openalex.org/I192455894","display_name":"University of Nova Gorica","ror":"https://ror.org/00mw0tw28","country_code":"SI","type":"education","lineage":["https://openalex.org/I192455894"]},{"id":"https://openalex.org/I3006985408","display_name":"Jo\u017eef Stefan Institute","ror":"https://ror.org/05060sz93","country_code":"SI","type":"facility","lineage":["https://openalex.org/I3006985408"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Nada Lavra\u010d","raw_affiliation_strings":["Jo\u017eef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia","University of Nova Gorica, Vipavska 13, 5000 Nova Gorica, Slovenia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jo\u017eef Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia","institution_ids":["https://openalex.org/I3006985408"]},{"raw_affiliation_string":"University of Nova Gorica, Vipavska 13, 5000 Nova Gorica, Slovenia","institution_ids":["https://openalex.org/I192455894"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I3006985408","https://openalex.org/I4210113529"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":{"value":2390,"currency":"EUR","value_usd":2990},"fwci":1.0006,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.73993181,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"109","issue":"11","first_page":"2161","last_page":"2193"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5673999786376953,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5673999786376953,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.20819999277591705,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.1762000024318695,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/silhouette","display_name":"Silhouette","score":0.9314000010490417},{"id":"https://openalex.org/keywords/modularity","display_name":"Modularity (biology)","score":0.6988999843597412},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6428999900817871},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5781999826431274},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5662000179290771},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5627999901771545},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.3617999851703644},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3610000014305115}],"concepts":[{"id":"https://openalex.org/C58103923","wikidata":"https://www.wikidata.org/wiki/Q2286025","display_name":"Silhouette","level":2,"score":0.9314000010490417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7555000185966492},{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.6988999843597412},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6428999900817871},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5932000279426575},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5781999826431274},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5662000179290771},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5627999901771545},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4406999945640564},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43529999256134033},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.3617999851703644},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3610000014305115},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.350600004196167},{"id":"https://openalex.org/C2776151529","wikidata":"https://www.wikidata.org/wiki/Q3045304","display_name":"Object detection","level":3,"score":0.3310000002384186},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.3248000144958496},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.30410000681877136},{"id":"https://openalex.org/C4727928","wikidata":"https://www.wikidata.org/wiki/Q17164759","display_name":"Social network (sociolinguistics)","level":3,"score":0.27790001034736633},{"id":"https://openalex.org/C105611402","wikidata":"https://www.wikidata.org/wiki/Q2976589","display_name":"Spectral clustering","level":3,"score":0.27639999985694885},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.262800008058548},{"id":"https://openalex.org/C114713312","wikidata":"https://www.wikidata.org/wiki/Q7551269","display_name":"Social network analysis","level":3,"score":0.26170000433921814}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/s10994-020-05882-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10994-020-05882-8","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10994-020-05882-8.pdf","source":{"id":"https://openalex.org/S62148650","display_name":"Machine Learning","issn_l":"0885-6125","issn":["0885-6125","1573-0565"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning","raw_type":"journal-article"},{"id":"pmid:33191975","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33191975","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine learning","raw_type":null},{"id":"pmh:oai:arXiv.org:1908.02556","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1908.02556","pdf_url":"https://arxiv.org/pdf/1908.02556","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7652809","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7652809","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mach Learn","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10994-020-05882-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10994-020-05882-8","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10994-020-05882-8.pdf","source":{"id":"https://openalex.org/S62148650","display_name":"Machine Learning","issn_l":"0885-6125","issn":["0885-6125","1573-0565"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Machine Learning","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2663932227","display_name":null,"funder_award_id":"N2-0078","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"},{"id":"https://openalex.org/G761742514","display_name":null,"funder_award_id":"825153","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"}],"funders":[{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2966515073.pdf","grobid_xml":"https://content.openalex.org/works/W2966515073.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W304239299","https://openalex.org/W1494581921","https://openalex.org/W1565608089","https://openalex.org/W1888005072","https://openalex.org/W1966119405","https://openalex.org/W1975606664","https://openalex.org/W1987971958","https://openalex.org/W1995213405","https://openalex.org/W1995996823","https://openalex.org/W1997944395","https://openalex.org/W2004791924","https://openalex.org/W2023655578","https://openalex.org/W2027966435","https://openalex.org/W2030644393","https://openalex.org/W2033403400","https://openalex.org/W2047888527","https://openalex.org/W2047940964","https://openalex.org/W2051224630","https://openalex.org/W2056259573","https://openalex.org/W2061099285","https://openalex.org/W2083620785","https://openalex.org/W2091861212","https://openalex.org/W2103017472","https://openalex.org/W2121167247","https://openalex.org/W2124209874","https://openalex.org/W2128366083","https://openalex.org/W2132022337","https://openalex.org/W2142838865","https://openalex.org/W2145280559","https://openalex.org/W2145658888","https://openalex.org/W2152175008","https://openalex.org/W2152246075","https://openalex.org/W2153579005","https://openalex.org/W2154851992","https://openalex.org/W2156821882","https://openalex.org/W2226981383","https://openalex.org/W2417168089","https://openalex.org/W2468907370","https://openalex.org/W2497752945","https://openalex.org/W2519887557","https://openalex.org/W2530194295","https://openalex.org/W2543232345","https://openalex.org/W2550720082","https://openalex.org/W2579963793","https://openalex.org/W2607500032","https://openalex.org/W2618798060","https://openalex.org/W2624431344","https://openalex.org/W2743418339","https://openalex.org/W2767547957","https://openalex.org/W2790771417","https://openalex.org/W2888699027","https://openalex.org/W2903499520","https://openalex.org/W2913916789","https://openalex.org/W2962756421","https://openalex.org/W2963105348","https://openalex.org/W2963224980","https://openalex.org/W2970971581","https://openalex.org/W2982532331","https://openalex.org/W4291474301","https://openalex.org/W6639055396","https://openalex.org/W6729392090"],"related_works":[],"abstract_inverted_index":{"Mining":[0],"complex":[1],"data":[2],"in":[3,12,125,135],"the":[4,35,65,68,108],"form":[5,92],"of":[6,9,29,49,57,67,93,132,154],"networks":[7],"is":[8,87,144],"increasing":[10],"interest":[11],"many":[13,155],"scientific":[14],"disciplines.":[15],"Network":[16],"communities":[17,133],"correspond":[18],"to":[19],"densely":[20],"connected":[21],"subnetworks,":[22],"and":[23,110,147,159],"often":[24],"represent":[25],"key":[26],"functional":[27],"parts":[28],"real-world":[30],"systems.":[31],"This":[32],"paper":[33],"proposes":[34],"embedding-based":[36],"Silhouette":[37],"community":[38,103],"detection":[39,104],"(SCD),":[40],"an":[41],"approach":[42,71],"for":[43],"detecting":[44],"communities,":[45],"based":[46,89],"on":[47,72,79,90],"clustering":[48],"network":[50,157],"node":[51],"embeddings,":[52],"i.e.":[53],"real":[54],"valued":[55],"representations":[56],"nodes":[58],"derived":[59],"from":[60],"their":[61],"neighborhoods.":[62],"We":[63],"investigate":[64],"performance":[66],"proposed":[69],"SCD":[70,86,143],"234":[73],"synthetic":[74],"networks,":[75],"as":[76,78,107,152],"well":[77],"a":[80,136],"real-life":[81,137],"social":[82],"network.":[83,140],"Even":[84],"though":[85],"not":[88],"any":[91],"modularity":[94],"optimization,":[95],"it":[96],"performs":[97],"comparably":[98],"or":[99],"better":[100],"than":[101],"state-of-the-art":[102],"algorithms,":[105],"such":[106],"InfoMap":[109],"Louvain.":[111],"Further,":[112],"we":[113],"demonstrate":[114],"that":[115],"SCD's":[116],"outputs":[117],"can":[118,148],"be":[119,149],"used":[120],"along":[121],"with":[122],"domain":[123],"ontologies":[124],"semantic":[126],"subgroup":[127],"discovery,":[128],"yielding":[129],"human-understandable":[130],"explanations":[131],"detected":[134],"protein":[138],"interaction":[139],"Being":[141],"embedding-based,":[142],"widely":[145],"applicable":[146],"tested":[150],"out-of-the-box":[151],"part":[153],"existing":[156],"learning":[158],"exploration":[160],"pipelines.":[161]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2019-08-13T00:00:00"}
