{"id":"https://openalex.org/W2120713344","doi":"https://doi.org/10.1007/s10898-007-9273-7","title":"Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle","display_name":"Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle","publication_year":2008,"publication_date":"2008-02-11","ids":{"openalex":"https://openalex.org/W2120713344","doi":"https://doi.org/10.1007/s10898-007-9273-7","mag":"2120713344"},"language":"en","primary_location":{"id":"doi:10.1007/s10898-007-9273-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10898-007-9273-7","pdf_url":null,"source":{"id":"https://openalex.org/S115925768","display_name":"Journal of Global Optimization","issn_l":"0925-5001","issn":["0925-5001","1573-2916"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Global Optimization","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069010254","display_name":"Thomas D. Panning","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thomas D. Panning","raw_affiliation_strings":["Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068161656","display_name":"Layne T. Watson","orcid":"https://orcid.org/0000-0003-2009-107X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Layne T. Watson","raw_affiliation_strings":["Departments of Computer Science and Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","Departments of Computer Science and Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Departments of Computer Science and Mathematics, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020967460","display_name":"Nicholas Allen","orcid":"https://orcid.org/0000-0002-7651-0811"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas A. Allen","raw_affiliation_strings":["Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015375342","display_name":"Katherine Chen","orcid":"https://orcid.org/0000-0002-5428-7196"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katherine C. Chen","raw_affiliation_strings":["Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012542741","display_name":"Clifford A. Shaffer","orcid":"https://orcid.org/0000-0003-0001-0295"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Clifford A. Shaffer","raw_affiliation_strings":["Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028908910","display_name":"John J. Tyson","orcid":"https://orcid.org/0000-0001-7560-6013"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John J. Tyson","raw_affiliation_strings":["Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Departments of Computer Science and Biological Sciences, Virginia Polytechnic Institute and State University, Blacksburg, USA 24061#TAB#","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5069010254"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":2190,"currency":"EUR","value_usd":2780},"apc_paid":null,"fwci":2.0743,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.86752168,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"40","issue":"4","first_page":"719","last_page":"738"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.6029468774795532},{"id":"https://openalex.org/keywords/global-optimization","display_name":"Global optimization","score":0.5938848257064819},{"id":"https://openalex.org/keywords/differential-evolution","display_name":"Differential evolution","score":0.5655279159545898},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.49426817893981934},{"id":"https://openalex.org/keywords/budding-yeast","display_name":"Budding yeast","score":0.45680493116378784},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4400758445262909},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4256989657878876},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4217202067375183},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.32357335090637207},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3052113652229309},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.250684529542923},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.17284134030342102}],"concepts":[{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.6029468774795532},{"id":"https://openalex.org/C164752517","wikidata":"https://www.wikidata.org/wiki/Q5570875","display_name":"Global optimization","level":2,"score":0.5938848257064819},{"id":"https://openalex.org/C74750220","wikidata":"https://www.wikidata.org/wiki/Q2662197","display_name":"Differential evolution","level":2,"score":0.5655279159545898},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.49426817893981934},{"id":"https://openalex.org/C2992884146","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Budding yeast","level":4,"score":0.45680493116378784},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4400758445262909},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4256989657878876},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4217202067375183},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.32357335090637207},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3052113652229309},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.250684529542923},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.17284134030342102},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s10898-007-9273-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10898-007-9273-7","pdf_url":null,"source":{"id":"https://openalex.org/S115925768","display_name":"Journal of Global Optimization","issn_l":"0925-5001","issn":["0925-5001","1573-2916"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Global Optimization","raw_type":"journal-article"},{"id":"pmh:oai:vtcstechreports.OAI2:730","is_oa":false,"landing_page_url":"http://eprints.cs.vt.edu/archive/00000730/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400253","display_name":"Computer Science Technical Reports (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Departmental Technical Report"},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/33360","is_oa":false,"landing_page_url":"http://hdl.handle.net/10919/33360","pdf_url":null,"source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Thesis"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1493249195","https://openalex.org/W1494766755","https://openalex.org/W1784252528","https://openalex.org/W1990546183","https://openalex.org/W1998855065","https://openalex.org/W2026079992","https://openalex.org/W2043982263","https://openalex.org/W2059665827","https://openalex.org/W2067655540","https://openalex.org/W2072376333","https://openalex.org/W2106054014","https://openalex.org/W2112610155","https://openalex.org/W2113741278","https://openalex.org/W2136609093","https://openalex.org/W2150750144","https://openalex.org/W2583249988","https://openalex.org/W6629494332"],"related_works":["https://openalex.org/W2035908454","https://openalex.org/W1994782139","https://openalex.org/W2242387338","https://openalex.org/W1579561123","https://openalex.org/W2069663777","https://openalex.org/W2137252459","https://openalex.org/W167034497","https://openalex.org/W2003581559","https://openalex.org/W2022165414","https://openalex.org/W2999982809"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
