{"id":"https://openalex.org/W2144750024","doi":"https://doi.org/10.1007/s10852-009-9107-3","title":"An Artificial Immune System for Clustering Amino Acids in the Context of Protein Function Classification","display_name":"An Artificial Immune System for Clustering Amino Acids in the Context of Protein Function Classification","publication_year":2009,"publication_date":"2009-02-24","ids":{"openalex":"https://openalex.org/W2144750024","doi":"https://doi.org/10.1007/s10852-009-9107-3","mag":"2144750024"},"language":"en","primary_location":{"id":"doi:10.1007/s10852-009-9107-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10852-009-9107-3","pdf_url":null,"source":{"id":"https://openalex.org/S80764785","display_name":"Journal of Mathematical Modelling and Algorithms","issn_l":"1570-1166","issn":["1570-1166","1572-9214"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Mathematical Modelling and Algorithms","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061536215","display_name":"Andrew Secker","orcid":null},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"A. Secker","raw_affiliation_strings":["Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, CT2 7NF, UK","Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, UK"],"affiliations":[{"raw_affiliation_string":"Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, CT2 7NF, UK","institution_ids":["https://openalex.org/I20581793"]},{"raw_affiliation_string":"Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, UK","institution_ids":["https://openalex.org/I20581793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101613652","display_name":"Matthew N Davies","orcid":"https://orcid.org/0000-0003-2294-7839"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210153742","display_name":"Jenner Institute","ror":"https://ror.org/05kwhph67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210153742"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. N. Davies","raw_affiliation_strings":["The Jenner Institute, University of Oxford, Compton, Newbury, Berkshire, RG20 7NN, UK","The Jenner Institute, University of Oxford, Berkshire, UK"],"affiliations":[{"raw_affiliation_string":"The Jenner Institute, University of Oxford, Compton, Newbury, Berkshire, RG20 7NN, UK","institution_ids":["https://openalex.org/I4210153742","https://openalex.org/I40120149"]},{"raw_affiliation_string":"The Jenner Institute, University of Oxford, Berkshire, UK","institution_ids":["https://openalex.org/I4210153742","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087201377","display_name":"Alex A. Freitas","orcid":"https://orcid.org/0000-0001-9825-4700"},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. A. Freitas","raw_affiliation_strings":["Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, CT2 7NF, UK","Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, UK"],"affiliations":[{"raw_affiliation_string":"Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, CT2 7NF, UK","institution_ids":["https://openalex.org/I20581793"]},{"raw_affiliation_string":"Computing Laboratory and Centre for BioMedical Informatics, University of Kent, Canterbury, UK","institution_ids":["https://openalex.org/I20581793"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080582720","display_name":"Jon Timmis","orcid":"https://orcid.org/0000-0003-1055-0471"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. Timmis","raw_affiliation_strings":["Departments of Computer Science and Electronics, University of York, York, YO10 5DD, UK","Departments of Computer Science and Electronics, University of York, York, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Electronics, University of York, York, YO10 5DD, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"Departments of Computer Science and Electronics, University of York, York, UK#TAB#","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111461727","display_name":"Edward Clark","orcid":null},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"E. Clark","raw_affiliation_strings":["Departments of Computer Science and Electronics, University of York, York, YO10 5DD, UK","Departments of Computer Science and Electronics, University of York, York, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"Departments of Computer Science and Electronics, University of York, York, YO10 5DD, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"Departments of Computer Science and Electronics, University of York, York, UK#TAB#","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052912254","display_name":"Darren R. Flower","orcid":"https://orcid.org/0000-0002-8542-7067"},"institutions":[{"id":"https://openalex.org/I4210153742","display_name":"Jenner Institute","ror":"https://ror.org/05kwhph67","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210153742"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D. R. Flower","raw_affiliation_strings":["The Jenner Institute, University of Oxford, Compton, Newbury, Berkshire, RG20 7NN, UK","The Jenner Institute, University of Oxford, Berkshire, UK"],"affiliations":[{"raw_affiliation_string":"The Jenner Institute, University of Oxford, Compton, Newbury, Berkshire, RG20 7NN, UK","institution_ids":["https://openalex.org/I4210153742","https://openalex.org/I40120149"]},{"raw_affiliation_string":"The Jenner Institute, University of Oxford, Berkshire, UK","institution_ids":["https://openalex.org/I4210153742","https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5061536215"],"corresponding_institution_ids":["https://openalex.org/I20581793"],"apc_list":null,"apc_paid":null,"fwci":0.9118,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.77022429,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"8","issue":"2","first_page":"103","last_page":"123"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12391","display_name":"Artificial Immune Systems Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12391","display_name":"Artificial Immune Systems Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11171","display_name":"Diabetes and associated disorders","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6790755987167358},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6386809945106506},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6328582167625427},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6078329682350159},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.5888378620147705},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5575023293495178},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.5346981883049011},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5067041516304016},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.49890756607055664},{"id":"https://openalex.org/keywords/decision-tree","display_name":"Decision tree","score":0.49404314160346985},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4916754364967346},{"id":"https://openalex.org/keywords/artificial-immune-system","display_name":"Artificial immune system","score":0.4612606167793274},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4536724090576172},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.41600707173347473},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3561773896217346},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.3511117994785309},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3377988934516907},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1866087019443512},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10181766748428345},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06881910562515259}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6790755987167358},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6386809945106506},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6328582167625427},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6078329682350159},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.5888378620147705},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5575023293495178},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.5346981883049011},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5067041516304016},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.49890756607055664},{"id":"https://openalex.org/C84525736","wikidata":"https://www.wikidata.org/wiki/Q831366","display_name":"Decision tree","level":2,"score":0.49404314160346985},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4916754364967346},{"id":"https://openalex.org/C93768804","wikidata":"https://www.wikidata.org/wiki/Q2518735","display_name":"Artificial immune system","level":2,"score":0.4612606167793274},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4536724090576172},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.41600707173347473},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3561773896217346},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.3511117994785309},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3377988934516907},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1866087019443512},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10181766748428345},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06881910562515259},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s10852-009-9107-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10852-009-9107-3","pdf_url":null,"source":{"id":"https://openalex.org/S80764785","display_name":"Journal of Mathematical Modelling and Algorithms","issn_l":"1570-1166","issn":["1570-1166","1572-9214"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Mathematical Modelling and Algorithms","raw_type":"journal-article"},{"id":"pmh:oai:kar.kent.ac.uk:24125","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10852-009-9107-3>)","pdf_url":null,"source":{"id":"https://openalex.org/S4377196264","display_name":"Kent Academic Repository (University of Kent)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20581793","host_organization_name":"University of Kent","host_organization_lineage":["https://openalex.org/I20581793"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"NonPeerReviewed"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W41890578","https://openalex.org/W51161921","https://openalex.org/W192749064","https://openalex.org/W1481879858","https://openalex.org/W1528113134","https://openalex.org/W1570448133","https://openalex.org/W1602306524","https://openalex.org/W1804670083","https://openalex.org/W1974664442","https://openalex.org/W1975670646","https://openalex.org/W2005462790","https://openalex.org/W2005604222","https://openalex.org/W2014332260","https://openalex.org/W2018782485","https://openalex.org/W2024213882","https://openalex.org/W2025605951","https://openalex.org/W2031198307","https://openalex.org/W2038670239","https://openalex.org/W2051869681","https://openalex.org/W2091568186","https://openalex.org/W2095775529","https://openalex.org/W2103031848","https://openalex.org/W2108398740","https://openalex.org/W2114068014","https://openalex.org/W2121847038","https://openalex.org/W2123717481","https://openalex.org/W2130783152","https://openalex.org/W2139237500","https://openalex.org/W2139774535","https://openalex.org/W2151040995","https://openalex.org/W2157516796","https://openalex.org/W2497384426","https://openalex.org/W2912485311","https://openalex.org/W4243874760","https://openalex.org/W4256170791","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2592952084","https://openalex.org/W3210877509","https://openalex.org/W1470425429","https://openalex.org/W4283016678","https://openalex.org/W4249746146","https://openalex.org/W4318350883","https://openalex.org/W2384898861","https://openalex.org/W2889849809","https://openalex.org/W2061453990","https://openalex.org/W1521398555"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
