{"id":"https://openalex.org/W7162784337","doi":"https://doi.org/10.1007/s10822-026-00843-0","title":"Prediction of multicategory miRNA-disease associations based on bidirectional hypergraph attention network and gated convolutional strategy","display_name":"Prediction of multicategory miRNA-disease associations based on bidirectional hypergraph attention network and gated convolutional strategy","publication_year":2026,"publication_date":"2026-05-29","ids":{"openalex":"https://openalex.org/W7162784337","doi":"https://doi.org/10.1007/s10822-026-00843-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/42213148"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-026-00843-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-026-00843-0","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5137310565","display_name":"Yan Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Sun","raw_affiliation_strings":["School of Engineering, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Engineering, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137319682","display_name":"Xiaoqi Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqi Tang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137351818","display_name":"Junliang Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]},{"id":"https://openalex.org/I4210158179","display_name":"Yellow River Institute of Hydraulic Research","ror":"https://ror.org/0506q7a98","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210155611","https://openalex.org/I4210158179"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Junliang Shang","raw_affiliation_strings":["Rizhao-Qufu Normal University Joint Technology Transfer Center, Qufu Normal University, Rizhao, 276826, China. shangjunliang110@163.com","School of Computer Science, Qufu Normal University, Rizhao, 276826, China. shangjunliang110@163.com","Shandong Key Laboratory of Wetland Ecology and Biodiversity Conservation in the Lower Yellow River, Qufu, 273165, China. shangjunliang110@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rizhao-Qufu Normal University Joint Technology Transfer Center, Qufu Normal University, Rizhao, 276826, China. shangjunliang110@163.com","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, 276826, China. shangjunliang110@163.com","institution_ids":["https://openalex.org/I202126657"]},{"raw_affiliation_string":"Shandong Key Laboratory of Wetland Ecology and Biodiversity Conservation in the Lower Yellow River, Qufu, 273165, China. shangjunliang110@163.com","institution_ids":["https://openalex.org/I4210158179"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123594448","display_name":"Hanxiang Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanxiang Wang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011606369","display_name":"Defu Qiu","orcid":"https://orcid.org/0000-0003-4921-9145"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Defu Qiu","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137380144","display_name":"Yuanke Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanke Zhang","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, 276826, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, 276826, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101898967","display_name":"Jinxing Liu","orcid":"https://orcid.org/0000-0003-0244-9752"},"institutions":[{"id":"https://openalex.org/I4210164233","display_name":"Health & Life (Taiwan)","ror":"https://ror.org/05nnz8429","country_code":"TW","type":"company","lineage":["https://openalex.org/I4210164233"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Life Sciences and Health, University of Health and Rehabilitation Sciences, Qingdao, 266113, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Health, University of Health and Rehabilitation Sciences, Qingdao, 266113, China","institution_ids":["https://openalex.org/I4210164233"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5137351818"],"corresponding_institution_ids":["https://openalex.org/I202126657","https://openalex.org/I4210158179"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.68027296,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9627000093460083,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.009800000116229057,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0026000000070780516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7258999943733215},{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.6615999937057495},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5454999804496765},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5418999791145325},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.45489999651908875},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.44690001010894775},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4099999964237213},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.3910999894142151}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7258999943733215},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6823999881744385},{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.6615999937057495},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5454999804496765},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5418999791145325},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47929999232292175},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.45489999651908875},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.44690001010894775},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4099999964237213},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39410001039505005},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.3910999894142151},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.37049999833106995},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.3628999888896942},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.3594000041484833},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3555000126361847},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.29269999265670776},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.2921999990940094},{"id":"https://openalex.org/C2993807640","wikidata":"https://www.wikidata.org/wiki/Q103709453","display_name":"Attention network","level":2,"score":0.2669999897480011},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.2597000002861023},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.2583000063896179},{"id":"https://openalex.org/C104122410","wikidata":"https://www.wikidata.org/wiki/Q1416406","display_name":"Network model","level":2,"score":0.2554999887943268}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-026-00843-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-026-00843-0","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:42213148","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42213148","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5383490324020386,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W2001653341","https://openalex.org/W2014946489","https://openalex.org/W2023361805","https://openalex.org/W2030489111","https://openalex.org/W2044967196","https://openalex.org/W2103177465","https://openalex.org/W2106029302","https://openalex.org/W2112785261","https://openalex.org/W2124163534","https://openalex.org/W2134245005","https://openalex.org/W2143056191","https://openalex.org/W2404879104","https://openalex.org/W2470277042","https://openalex.org/W2890210379","https://openalex.org/W2891340777","https://openalex.org/W2944230847","https://openalex.org/W2969513393","https://openalex.org/W2991244698","https://openalex.org/W2991324851","https://openalex.org/W3001041847","https://openalex.org/W3010217868","https://openalex.org/W3040882011","https://openalex.org/W3056295111","https://openalex.org/W3080149531","https://openalex.org/W3092245147","https://openalex.org/W3112407107","https://openalex.org/W3128027065","https://openalex.org/W3136042383","https://openalex.org/W3143789190","https://openalex.org/W3212386989","https://openalex.org/W4206703149","https://openalex.org/W4210607727","https://openalex.org/W4220831705","https://openalex.org/W4224998848","https://openalex.org/W4246271082","https://openalex.org/W4281489838","https://openalex.org/W4283695165","https://openalex.org/W4283731688","https://openalex.org/W4283805566","https://openalex.org/W4289783515","https://openalex.org/W4295241431","https://openalex.org/W4297474196","https://openalex.org/W4297859554","https://openalex.org/W4386305887","https://openalex.org/W4389076297","https://openalex.org/W4390872292","https://openalex.org/W4401611767","https://openalex.org/W4401971273","https://openalex.org/W4402121173","https://openalex.org/W4403917513","https://openalex.org/W4404733499","https://openalex.org/W4417337791"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-12T07:33:03.550515","created_date":"2026-05-30T00:00:00"}
