{"id":"https://openalex.org/W7151874133","doi":"https://doi.org/10.1007/s10822-026-00800-x","title":"In silico aptamer design: from sequence selection to structural optimization and computational modelling strategies","display_name":"In silico aptamer design: from sequence selection to structural optimization and computational modelling strategies","publication_year":2026,"publication_date":"2026-04-09","ids":{"openalex":"https://openalex.org/W7151874133","doi":"https://doi.org/10.1007/s10822-026-00800-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/41951835"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-026-00800-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-026-00800-x","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5092876223","display_name":"Amrita Sinharay","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088227","display_name":"MIT World Peace University","ror":"https://ror.org/004ymxd45","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210088227"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Amrita Sinharay","raw_affiliation_strings":["Department of Biosciences and Technology, Dr. Vishwanath Karad MIT-World Peace University, Pune, Maharashtra, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences and Technology, Dr. Vishwanath Karad MIT-World Peace University, Pune, Maharashtra, India","institution_ids":["https://openalex.org/I4210088227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133161105","display_name":"Meetrayu Raut","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088227","display_name":"MIT World Peace University","ror":"https://ror.org/004ymxd45","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210088227"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Meetrayu Raut","raw_affiliation_strings":["Department of Biosciences and Technology, Dr. Vishwanath Karad MIT-World Peace University, Pune, Maharashtra, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences and Technology, Dr. Vishwanath Karad MIT-World Peace University, Pune, Maharashtra, India","institution_ids":["https://openalex.org/I4210088227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5133149845","display_name":"Anup Kale","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088227","display_name":"MIT World Peace University","ror":"https://ror.org/004ymxd45","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210088227"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anup Kale","raw_affiliation_strings":["Department of Biosciences and Technology, Dr. Vishwanath Karad MIT-World Peace University, Pune, Maharashtra, India. anup.kale@mitwpu.edu.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences and Technology, Dr. Vishwanath Karad MIT-World Peace University, Pune, Maharashtra, India. anup.kale@mitwpu.edu.in","institution_ids":["https://openalex.org/I4210088227"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.50935725,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.17139999568462372,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.17139999568462372,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10904","display_name":"Embedded Systems Design Techniques","score":0.037300001829862595,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.029899999499320984,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.789900004863739},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6331999897956848},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5863999724388123},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.41440001130104065},{"id":"https://openalex.org/keywords/aptamer","display_name":"Aptamer","score":0.4058000147342682},{"id":"https://openalex.org/keywords/model-selection","display_name":"Model selection","score":0.29899999499320984}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.789900004863739},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6331999897956848},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5936999917030334},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5863999724388123},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5770999789237976},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.41440001130104065},{"id":"https://openalex.org/C128972844","wikidata":"https://www.wikidata.org/wiki/Q418722","display_name":"Aptamer","level":2,"score":0.4058000147342682},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4007999897003174},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31189998984336853},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3034999966621399},{"id":"https://openalex.org/C93959086","wikidata":"https://www.wikidata.org/wiki/Q6888345","display_name":"Model selection","level":2,"score":0.29899999499320984},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.2782000005245209},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.27469998598098755},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.2734000086784363},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2728999853134155},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2535000145435333},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25290000438690186},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.251800000667572},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.25110000371932983},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.250900000333786}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-026-00800-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-026-00800-x","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:41951835","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41951835","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F1482030557","display_name":"Dr. Vishwanath Karad MIT World Peace University","ror":"https://ror.org/004ymxd45"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":128,"referenced_works":["https://openalex.org/W14423103","https://openalex.org/W242446277","https://openalex.org/W1565717191","https://openalex.org/W1850136097","https://openalex.org/W1887624773","https://openalex.org/W1970478438","https://openalex.org/W1973758299","https://openalex.org/W1985956244","https://openalex.org/W2012231377","https://openalex.org/W2023735050","https://openalex.org/W2049015709","https://openalex.org/W2074619174","https://openalex.org/W2076034710","https://openalex.org/W2095719702","https://openalex.org/W2099207551","https://openalex.org/W2099857980","https://openalex.org/W2109783713","https://openalex.org/W2117109446","https://openalex.org/W2118233996","https://openalex.org/W2124395350","https://openalex.org/W2129512747","https://openalex.org/W2132213868","https://openalex.org/W2133279885","https://openalex.org/W2134967712","https://openalex.org/W2135643173","https://openalex.org/W2145382385","https://openalex.org/W2147993766","https://openalex.org/W2151309374","https://openalex.org/W2155933008","https://openalex.org/W2161605421","https://openalex.org/W2165032708","https://openalex.org/W2167564948","https://openalex.org/W2170564629","https://openalex.org/W2170595734","https://openalex.org/W2294163821","https://openalex.org/W2294654208","https://openalex.org/W2303457541","https://openalex.org/W2333224577","https://openalex.org/W2334323138","https://openalex.org/W2335480701","https://openalex.org/W2341052016","https://openalex.org/W2404280981","https://openalex.org/W2408987473","https://openalex.org/W2425381202","https://openalex.org/W2428079500","https://openalex.org/W2495359280","https://openalex.org/W2544121656","https://openalex.org/W2547323337","https://openalex.org/W2740071739","https://openalex.org/W2800208425","https://openalex.org/W2894823011","https://openalex.org/W2910318997","https://openalex.org/W2949223833","https://openalex.org/W2954094311","https://openalex.org/W2969715383","https://openalex.org/W2972404300","https://openalex.org/W2982402550","https://openalex.org/W3000632182","https://openalex.org/W3015083259","https://openalex.org/W3018732085","https://openalex.org/W3026641069","https://openalex.org/W3035476925","https://openalex.org/W3091169948","https://openalex.org/W3093005337","https://openalex.org/W3097537544","https://openalex.org/W3099560547","https://openalex.org/W3100736692","https://openalex.org/W3134787199","https://openalex.org/W3141159078","https://openalex.org/W3156401343","https://openalex.org/W3165269256","https://openalex.org/W3174909509","https://openalex.org/W3190330215","https://openalex.org/W3211147596","https://openalex.org/W3212034116","https://openalex.org/W3212802794","https://openalex.org/W4206705069","https://openalex.org/W4210412215","https://openalex.org/W4213370996","https://openalex.org/W4213385496","https://openalex.org/W4281258745","https://openalex.org/W4281695149","https://openalex.org/W4281786804","https://openalex.org/W4281958334","https://openalex.org/W4296766525","https://openalex.org/W4297239671","https://openalex.org/W4303613825","https://openalex.org/W4309743023","https://openalex.org/W4310834718","https://openalex.org/W4312057144","https://openalex.org/W4313454382","https://openalex.org/W4315642116","https://openalex.org/W4316013402","https://openalex.org/W4318203753","https://openalex.org/W4321375250","https://openalex.org/W4375950749","https://openalex.org/W4379469851","https://openalex.org/W4384933616","https://openalex.org/W4385300652","https://openalex.org/W4386220201","https://openalex.org/W4386847420","https://openalex.org/W4387166422","https://openalex.org/W4389049678","https://openalex.org/W4390911805","https://openalex.org/W4392051743","https://openalex.org/W4392582276","https://openalex.org/W4393993701","https://openalex.org/W4396773479","https://openalex.org/W4399109405","https://openalex.org/W4400772788","https://openalex.org/W4402645211","https://openalex.org/W4403612632","https://openalex.org/W4403878841","https://openalex.org/W4405534135","https://openalex.org/W4405807431","https://openalex.org/W4406220751","https://openalex.org/W4407766569","https://openalex.org/W4410874382","https://openalex.org/W4411036459","https://openalex.org/W4411413615","https://openalex.org/W4411991604","https://openalex.org/W4412582057","https://openalex.org/W4412650533","https://openalex.org/W4413141492","https://openalex.org/W4416734956","https://openalex.org/W4417523764","https://openalex.org/W7119134746","https://openalex.org/W7124445569"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2026-04-09T00:00:00"}
