{"id":"https://openalex.org/W4393931011","doi":"https://doi.org/10.1007/s10822-024-00561-5","title":"On the relevance of query definition in the performance of 3D ligand-based virtual screening","display_name":"On the relevance of query definition in the performance of 3D ligand-based virtual screening","publication_year":2024,"publication_date":"2024-04-04","ids":{"openalex":"https://openalex.org/W4393931011","doi":"https://doi.org/10.1007/s10822-024-00561-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/38573547"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-024-00561-5","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-024-00561-5","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-024-00561-5.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10822-024-00561-5.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056343673","display_name":"Javier V\u00e1zquez","orcid":"https://orcid.org/0000-0003-4400-6378"},"institutions":[{"id":"https://openalex.org/I4210166526","display_name":"Institut de Biologia Molecular de Barcelona","ror":"https://ror.org/05t8khn72","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210166526"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Javier V\u00e1zquez","raw_affiliation_strings":["Departament de Nutrici\u00f3, Ci\u00e8ncies de l'Alimentaci\u00f3 i Gastronomia, Facultat de Farm\u00e0cia i Ci\u00e8ncies de l'Alimentaci\u00f3, Institut de Qu\u00edmica Te\u00f2rica I Computacional (IQTC-UB), Institut de Biomedicina (IBUB), University of Barcelona, Av. Prat de la Riba 171 , Santa Coloma de Gramenet, -08921, Spain. javier.vazquez@pharmacelera.com","Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain. javier.vazquez@pharmacelera.com","Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain"],"raw_orcid":"https://orcid.org/0000-0003-4400-6378","affiliations":[{"raw_affiliation_string":"Departament de Nutrici\u00f3, Ci\u00e8ncies de l'Alimentaci\u00f3 i Gastronomia, Facultat de Farm\u00e0cia i Ci\u00e8ncies de l'Alimentaci\u00f3, Institut de Qu\u00edmica Te\u00f2rica I Computacional (IQTC-UB), Institut de Biomedicina (IBUB), University of Barcelona, Av. Prat de la Riba 171 , Santa Coloma de Gramenet, -08921, Spain. javier.vazquez@pharmacelera.com","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain. javier.vazquez@pharmacelera.com","institution_ids":["https://openalex.org/I4210166526"]},{"raw_affiliation_string":"Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052771158","display_name":"Ricardo L\u00f3pez Garc\u00eda","orcid":"https://orcid.org/0000-0002-4001-0508"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ricardo Garc\u00eda","raw_affiliation_strings":["Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104270658","display_name":"Paula Llinares","orcid":null},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Paula Llinares","raw_affiliation_strings":["Departament de Nutrici\u00f3, Ci\u00e8ncies de l'Alimentaci\u00f3 i Gastronomia, Facultat de Farm\u00e0cia i Ci\u00e8ncies de l'Alimentaci\u00f3, Institut de Qu\u00edmica Te\u00f2rica I Computacional (IQTC-UB), Institut de Biomedicina (IBUB), University of Barcelona, Av. Prat de la Riba 171 , Santa Coloma de Gramenet, -08921, Spain","Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Nutrici\u00f3, Ci\u00e8ncies de l'Alimentaci\u00f3 i Gastronomia, Facultat de Farm\u00e0cia i Ci\u00e8ncies de l'Alimentaci\u00f3, Institut de Qu\u00edmica Te\u00f2rica I Computacional (IQTC-UB), Institut de Biomedicina (IBUB), University of Barcelona, Av. Prat de la Riba 171 , Santa Coloma de Gramenet, -08921, Spain","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058817123","display_name":"F. Javier Luque","orcid":"https://orcid.org/0000-0002-8049-3567"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Javier Luque","raw_affiliation_strings":["Departament de Nutrici\u00f3, Ci\u00e8ncies de l'Alimentaci\u00f3 i Gastronomia, Facultat de Farm\u00e0cia i Ci\u00e8ncies de l'Alimentaci\u00f3, Institut de Qu\u00edmica Te\u00f2rica I Computacional (IQTC-UB), Institut de Biomedicina (IBUB), University of Barcelona, Av. Prat de la Riba 171 , Santa Coloma de Gramenet, -08921, Spain"],"raw_orcid":"https://orcid.org/0000-0002-8049-3567","affiliations":[{"raw_affiliation_string":"Departament de Nutrici\u00f3, Ci\u00e8ncies de l'Alimentaci\u00f3 i Gastronomia, Facultat de Farm\u00e0cia i Ci\u00e8ncies de l'Alimentaci\u00f3, Institut de Qu\u00edmica Te\u00f2rica I Computacional (IQTC-UB), Institut de Biomedicina (IBUB), University of Barcelona, Av. Prat de la Riba 171 , Santa Coloma de Gramenet, -08921, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084225442","display_name":"Enric Herrero","orcid":"https://orcid.org/0000-0001-7837-3593"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Enric Herrero","raw_affiliation_strings":["Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain"],"raw_orcid":"https://orcid.org/0000-0001-7837-3593","affiliations":[{"raw_affiliation_string":"Pharmacelera, Parc Cient\u00edfic de Barcelona (PCB), C/ Baldiri Reixac 4-8, Barcelona, 08028, Spain","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5056343673"],"corresponding_institution_ids":["https://openalex.org/I4210166526","https://openalex.org/I71999127"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":{"value":2890,"currency":"EUR","value_usd":3690},"fwci":1.7293,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.85110068,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"38","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11407","display_name":"Innovative Microfluidic and Catalytic Techniques Innovation","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.7492148280143738},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6463298797607422},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6423097848892212},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6101032495498657},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5365599989891052},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5338505506515503},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.5332780480384827},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.44008737802505493},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.420158326625824},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3847392201423645},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3682998716831207},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2157939076423645},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1788310706615448},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.1613132655620575},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.1229960024356842},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12031620740890503},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08776301145553589}],"concepts":[{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.7492148280143738},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6463298797607422},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6423097848892212},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6101032495498657},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5365599989891052},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5338505506515503},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.5332780480384827},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.44008737802505493},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.420158326625824},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3847392201423645},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3682998716831207},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2157939076423645},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1788310706615448},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.1613132655620575},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.1229960024356842},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12031620740890503},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08776301145553589},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10822-024-00561-5","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-024-00561-5","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-024-00561-5.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:38573547","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38573547","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10995064","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10995064","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10995064/pdf/10822_2024_Article_561.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Aided Mol Des","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10822-024-00561-5","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-024-00561-5","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-024-00561-5.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323428","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4393931011.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1487942432","https://openalex.org/W1559648857","https://openalex.org/W1965721706","https://openalex.org/W1988037271","https://openalex.org/W1989856356","https://openalex.org/W1995850373","https://openalex.org/W2001816314","https://openalex.org/W2027065525","https://openalex.org/W2042110087","https://openalex.org/W2056881083","https://openalex.org/W2058820833","https://openalex.org/W2062792224","https://openalex.org/W2071579644","https://openalex.org/W2071658986","https://openalex.org/W2074431217","https://openalex.org/W2078374001","https://openalex.org/W2081266727","https://openalex.org/W2093876128","https://openalex.org/W2109415161","https://openalex.org/W2132842501","https://openalex.org/W2147571602","https://openalex.org/W2157296083","https://openalex.org/W2221330345","https://openalex.org/W2261817273","https://openalex.org/W2281410876","https://openalex.org/W2613133334","https://openalex.org/W2810411779","https://openalex.org/W2884931516","https://openalex.org/W2920995682","https://openalex.org/W3015273333","https://openalex.org/W3016398046","https://openalex.org/W3022354125","https://openalex.org/W3092712933","https://openalex.org/W3164710001","https://openalex.org/W3174664347","https://openalex.org/W3213030203","https://openalex.org/W4287009384","https://openalex.org/W4292296636","https://openalex.org/W4362573458","https://openalex.org/W4390743355"],"related_works":["https://openalex.org/W2121300814","https://openalex.org/W4231091074","https://openalex.org/W1886613375","https://openalex.org/W4236081792","https://openalex.org/W4250583430","https://openalex.org/W4234406076","https://openalex.org/W2010731026","https://openalex.org/W4311328601","https://openalex.org/W2360893094","https://openalex.org/W4390787808"],"abstract_inverted_index":{"Abstract":[0,264],"Ligand-based":[1],"virtual":[2],"screening":[3],"(LBVS)":[4],"methods":[5],"are":[6],"widely":[7],"used":[8],"to":[9,22,64,94,173,202],"explore":[10],"the":[11,16,41,50,61,70,78,85,89,95,99,122,134,143,151,175,186,194,207,217,223,227,231,235,253,256],"vast":[12],"chemical":[13],"space":[14,57],"in":[15,28,167,183,222,234,259],"search":[17,53],"of":[18,25,36,43,49,54,60,73,80,88,121,125,136,142,209,219,230,237,244,255],"novel":[19],"compounds":[20],"resorting":[21],"a":[23,112,157,190,197],"variety":[24],"properties":[26],"encoded":[27],"1D,":[29],"2D":[30,176],"or":[31],"3D":[32,113,260],"descriptors.":[33],"The":[34,106,146,242],"success":[35],"3D-LBVS":[37],"is":[38,108,131,148,200],"affected":[39],"by":[40,98,140],"overlay":[42],"molecular":[44],"pairs,":[45],"thus":[46],"making":[47],"selection":[48,254],"template":[51,179,213],"compound,":[52],"accessible":[55],"conformational":[56,220],"and":[58,104,127,156,180,214,216],"choice":[59],"query":[62,86,187,232,257],"conformation":[63,87,188],"be":[65],"potential":[66],"factors":[67],"that":[68,116,225],"modulate":[69],"successful":[71],"retrieval":[72],"actives.":[74,105,181],"This":[75],"study":[76,147],"examines":[77],"impact":[79,229],"adopting":[81],"different":[82],"choices":[83],"for":[84,150,239,251],"template,":[90,224],"paying":[91],"also":[92,247],"attention":[93],"influence":[96,192],"exerted":[97],"structural":[100,210],"similarity":[101,119],"between":[102,178,212],"templates":[103],"analysis":[107,199],"performed":[109,149],"using":[110],"PharmScreen,":[111],"LBVS":[114,261],"tool":[115],"relies":[117],"on":[118,133,193],"measurements":[120],"hydrophobic/philic":[123],"pattern":[124],"molecules,":[126],"Phase":[128],"Shape,":[129],"which":[130,170],"based":[132],"alignment":[135],"atom":[137],"triplets":[138],"followed":[139],"refinement":[141],"volume":[144],"overlap.":[145],"original":[152],"DUD-E":[153,163],"+":[154,164],"database":[155],"Morgan":[158],"Fingerprint":[159],"filtered":[160],"version":[161],"(denoted":[162],"-Diverse;":[165],"available":[166],"https://github.com/Pharmacelera/Query-models-to-3DLBVS":[168],"),":[169],"was":[171],"prepared":[172],"minimize":[174],"resemblance":[177],"Although":[182],"most":[184],"cases":[185],"exhibits":[189],"mild":[191],"overall":[195],"performance,":[196],"critical":[198],"made":[201],"disclose":[203],"factors,":[204],"such":[205],"as":[206],"content":[208],"features":[211],"actives":[215,238],"induction":[218],"strain":[221],"underlie":[226],"drastic":[228],"definition":[233,258],"recovery":[236],"certain":[240],"targets.":[241],"findings":[243],"this":[245],"research":[246],"provide":[248],"valuable":[249],"guidance":[250],"assisting":[252],"campaigns.":[262],"Graphical":[263]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
