{"id":"https://openalex.org/W4387692254","doi":"https://doi.org/10.1007/s10822-023-00539-9","title":"Artificial intelligence for prediction of biological activities and generation of molecular hits using stereochemical information","display_name":"Artificial intelligence for prediction of biological activities and generation of molecular hits using stereochemical information","publication_year":2023,"publication_date":"2023-10-17","ids":{"openalex":"https://openalex.org/W4387692254","doi":"https://doi.org/10.1007/s10822-023-00539-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/37847342"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-023-00539-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-023-00539-9","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00539-9.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00539-9.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020082077","display_name":"Tiago Pereira","orcid":"https://orcid.org/0000-0003-2487-0097"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Tiago O. Pereira","raw_affiliation_strings":["Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal. top@dei.uc.pt","Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal. top@dei.uc.pt","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064251517","display_name":"Maryam Abbasi","orcid":"https://orcid.org/0000-0002-9011-0734"},"institutions":[{"id":"https://openalex.org/I293362453","display_name":"Polytechnic Institute of Coimbra","ror":"https://ror.org/01n8x4993","country_code":"PT","type":"education","lineage":["https://openalex.org/I293362453"]},{"id":"https://openalex.org/I4210150309","display_name":"Research Center for Natural Resources, Environment and Society","ror":"https://ror.org/03n7krn06","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210150309"]},{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Maryam Abbasi","raw_affiliation_strings":["Applied Research Institute, Polytechnic Institute of Coimbra, Coimbra, Portugal","Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal","Research Centre for Natural Resources Environment and Society (CERNAS), Polytechnic Institute of Coimbra, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Applied Research Institute, Polytechnic Institute of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I293362453"]},{"raw_affiliation_string":"Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"Research Centre for Natural Resources Environment and Society (CERNAS), Polytechnic Institute of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I293362453","https://openalex.org/I4210150309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063602589","display_name":"Rita I. Oliveira","orcid":"https://orcid.org/0000-0002-1511-4364"},"institutions":[{"id":"https://openalex.org/I4210123128","display_name":"Center for Neurosciences","ror":"https://ror.org/03b5vk392","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210123128"]},{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT","US"],"is_corresponding":false,"raw_author_name":"Rita I. Oliveira","raw_affiliation_strings":["Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, Coimbra, Portugal","Laboratory of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Coimbra, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, Coimbra, Portugal","institution_ids":["https://openalex.org/I4210123128"]},{"raw_affiliation_string":"Laboratory of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101517328","display_name":"Romina A. Guedes","orcid":"https://orcid.org/0000-0002-4397-7968"},"institutions":[{"id":"https://openalex.org/I4210123128","display_name":"Center for Neurosciences","ror":"https://ror.org/03b5vk392","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210123128"]},{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT","US"],"is_corresponding":false,"raw_author_name":"Romina A. Guedes","raw_affiliation_strings":["Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, Coimbra, Portugal","Laboratory of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Coimbra, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, Coimbra, Portugal","institution_ids":["https://openalex.org/I4210123128"]},{"raw_affiliation_string":"Laboratory of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060222682","display_name":"Jorge A. R. Salvador","orcid":"https://orcid.org/0000-0003-0779-6083"},"institutions":[{"id":"https://openalex.org/I4210123128","display_name":"Center for Neurosciences","ror":"https://ror.org/03b5vk392","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210123128"]},{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT","US"],"is_corresponding":false,"raw_author_name":"Jorge A. R. Salvador","raw_affiliation_strings":["Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, Coimbra, Portugal","Laboratory of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Coimbra, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, Coimbra, Portugal","institution_ids":["https://openalex.org/I4210123128"]},{"raw_affiliation_string":"Laboratory of Pharmaceutical Chemistry, Faculty of Pharmacy, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043572862","display_name":"Joel P. Arrais","orcid":"https://orcid.org/0000-0003-4937-2334"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Joel P. Arrais","raw_affiliation_strings":["Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Informatics and Systems, Department of Informatics Engineering, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5020082077"],"corresponding_institution_ids":["https://openalex.org/I76903346"],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":{"value":3690,"currency":"USD","value_usd":3690},"fwci":0.7116,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.73486311,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"37","issue":"12","first_page":"791","last_page":"806"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4516552686691284},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39495959877967834}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4516552686691284},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39495959877967834}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1007/s10822-023-00539-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-023-00539-9","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00539-9.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:37847342","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37847342","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10618333","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10618333","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10618333/pdf/10822_2023_Article_539.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Aided Mol Des","raw_type":"Text"},{"id":"pmh:oai:estudogeral.uc.pt:10316/111187","is_oa":true,"landing_page_url":"https://hdl.handle.net/10316/111187","pdf_url":null,"source":{"id":"https://openalex.org/S4306402070","display_name":"Estudo Geral (Universidad de Coimbra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I76903346","host_organization_name":"University of Coimbra","host_organization_lineage":["https://openalex.org/I76903346"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1007/s10822-023-00539-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-023-00539-9","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00539-9.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1779328845","display_name":"CENTRE FOR INFORMATICS AND SYSTEMS OF THE UNIVERSITY OF COIMBRA","funder_award_id":"UIDB/00326/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4811366021","display_name":null,"funder_award_id":"00326","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5919305050","display_name":"New inhibitors of ubiquitin-specific protease 7 USP7 as anticancer drugs","funder_award_id":"2021.07538.BD","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6808337271","display_name":null,"funder_award_id":"2021.151089.BD","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G704622720","display_name":null,"funder_award_id":"CEEC-INST/00077/2021","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7723378919","display_name":null,"funder_award_id":"Unit-UIDB/00326/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320323392","display_name":"Universidade de Coimbra","ror":"https://ror.org/04z8k9a98"},{"id":"https://openalex.org/F4320323642","display_name":"Minist\u00e9rio da Ci\u00eancia, Tecnologia e Ensino Superior","ror":"https://ror.org/045b9pr88"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4387692254.pdf"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1981276685","https://openalex.org/W1988037271","https://openalex.org/W2160592148","https://openalex.org/W2529996553","https://openalex.org/W2578240541","https://openalex.org/W2587517604","https://openalex.org/W2609462956","https://openalex.org/W2618625858","https://openalex.org/W2739666799","https://openalex.org/W2773987374","https://openalex.org/W2782438044","https://openalex.org/W2790759781","https://openalex.org/W2792455800","https://openalex.org/W2794994220","https://openalex.org/W2891868449","https://openalex.org/W2894232300","https://openalex.org/W2898391595","https://openalex.org/W2900694120","https://openalex.org/W2914542247","https://openalex.org/W2943380091","https://openalex.org/W2945551948","https://openalex.org/W2949986955","https://openalex.org/W2950978129","https://openalex.org/W2953128081","https://openalex.org/W2998571806","https://openalex.org/W3009999522","https://openalex.org/W3024423177","https://openalex.org/W3028161460","https://openalex.org/W3050693196","https://openalex.org/W3098269892","https://openalex.org/W3100751385","https://openalex.org/W3112587790","https://openalex.org/W3126767825","https://openalex.org/W3157632540","https://openalex.org/W3177533410","https://openalex.org/W4214717370","https://openalex.org/W4295974708","https://openalex.org/W4315645662"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"In":[0],"this":[1,35,99,147,160],"work,":[2],"we":[3,74,116,131],"develop":[4],"a":[5,25,38],"method":[6],"for":[7,95,159,194,219],"generating":[8,156],"targeted":[9],"hit":[10],"compounds":[11],"by":[12,155],"applying":[13],"deep":[14,39],"reinforcement":[15],"learning":[16],"and":[17,50,71,107],"attention":[18,79,175],"mechanisms":[19,80],"to":[20,81,89,124,138,211],"predict":[21],"binding":[22,97],"affinity":[23,218],"against":[24,149],"biological":[26,217],"target":[27],"while":[28],"considering":[29],"stereochemical":[30,93,129,228],"information.":[31],"The":[32,162],"novelty":[33],"of":[34,62,78,92,128,187,225],"work":[36],"is":[37,209],"model":[40],"Predictor":[41],"that":[42,191,207],"can":[43],"establish":[44],"the":[45,60,76,90,96,105,112,118,126,134,140,150,178,185,188,195,198,203,220,223],"relationship":[46],"between":[47],"chemical":[48],"structures":[49],"their":[51,226],"corresponding":[52],"[Formula:":[53],"see":[54],"text]":[55],"values.":[56],"We":[57,145],"thoroughly":[58],"study":[59],"effect":[61],"different":[63],"molecular":[64,86],"descriptors":[65],"such":[66],"as":[67,167],"ECFP4,":[68],"ECFP6,":[69],"SMILES":[70,165],"RDKFingerprint.":[72],"Also,":[73,202],"demonstrated":[75],"importance":[77,91],"capture":[82],"long-range":[83],"dependencies":[84],"in":[85,104],"sequences.":[87],"Due":[88],"information":[94,100],"mechanism,":[98],"was":[101],"employed":[102],"both":[103],"prediction":[106],"generation":[108],"processes.":[109],"To":[110],"identify":[111,184],"most":[113,141],"promising":[114],"hits,":[115],"apply":[117],"self-adaptive":[119],"multi-objective":[120],"optimization":[121],"strategy.":[122],"Moreover,":[123],"ensure":[125],"existence":[127],"information,":[130],"consider":[132],"all":[133],"possible":[135,210],"enumerated":[136],"stereoisomers":[137],"provide":[139],"appropriate":[142],"3D":[143],"structures.":[144],"evaluated":[146],"approach":[148],"Ubiquitin-Specific":[151],"Protease":[152],"7":[153],"(USP7)":[154],"putative":[157],"inhibitors":[158],"target.":[161],"predictor":[163],"with":[164,197,215],"notations":[166],"descriptor":[168],"plus":[169],"bidirectional":[170],"recurrent":[171],"neural":[172],"network":[173],"using":[174],"mechanism":[176],"has":[177],"best":[179],"performance.":[180],"Additionally,":[181],"our":[182],"methodology":[183],"regions":[186],"generated":[189],"molecules":[190,214],"are":[192],"important":[193],"interaction":[196],"receptor's":[199],"active":[200],"site.":[201],"obtained":[204],"results":[205],"demonstrate":[206],"it":[208],"discover":[212],"synthesizable":[213],"high":[216],"target,":[221],"containing":[222],"indication":[224],"optimal":[227],"conformation.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
