{"id":"https://openalex.org/W4366722702","doi":"https://doi.org/10.1007/s10822-023-00505-5","title":"TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa","display_name":"TargIDe: a machine-learning workflow for target identification of molecules with antibiofilm activity against Pseudomonas aeruginosa","publication_year":2023,"publication_date":"2023-04-22","ids":{"openalex":"https://openalex.org/W4366722702","doi":"https://doi.org/10.1007/s10822-023-00505-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/37085636"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-023-00505-5","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-023-00505-5","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00505-5.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00505-5.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027520870","display_name":"Jo\u00e3o Carneiro","orcid":"https://orcid.org/0000-0002-5153-2395"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Jo\u00e3o Carneiro","raw_affiliation_strings":["Interdisciplinary Centre of Marine and Environmental Research, CIIMAR, University of Porto, Terminal de Cruzeiros do Porto de Leix\u00f5es, Av. General Norton de Matos, s/n, Porto, 4450-208, Portugal. joaomiguelsov@gmail.com"],"raw_orcid":"https://orcid.org/0000-0002-5153-2395","affiliations":[{"raw_affiliation_string":"Interdisciplinary Centre of Marine and Environmental Research, CIIMAR, University of Porto, Terminal de Cruzeiros do Porto de Leix\u00f5es, Av. General Norton de Matos, s/n, Porto, 4450-208, Portugal. joaomiguelsov@gmail.com","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091013709","display_name":"Rita P. Magalh\u00e3es","orcid":"https://orcid.org/0000-0002-0156-2545"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Rita P. Magalh\u00e3es","raw_affiliation_strings":["Department of Biomedicine, Faculty of Medicine, UCIBIO-Applied Molecular Biosciences Unit, University of Porto, BioSIM, Porto, 4200-319, Portugal","Faculty of Medicine, Associate Laboratory i4HB-Institute for Health and Bioeconomy, University of Porto, 4200-319, Porto, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-0156-2545","affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Faculty of Medicine, UCIBIO-Applied Molecular Biosciences Unit, University of Porto, BioSIM, Porto, 4200-319, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Faculty of Medicine, Associate Laboratory i4HB-Institute for Health and Bioeconomy, University of Porto, 4200-319, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010126132","display_name":"Victor M de la Oliva Roque","orcid":null},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Victor M. de la Oliva Roque","raw_affiliation_strings":["Department of Biomedicine, Faculty of Medicine, UCIBIO-Applied Molecular Biosciences Unit, University of Porto, BioSIM, Porto, 4200-319, Portugal","Faculty of Medicine, Associate Laboratory i4HB-Institute for Health and Bioeconomy, University of Porto, 4200-319, Porto, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Faculty of Medicine, UCIBIO-Applied Molecular Biosciences Unit, University of Porto, BioSIM, Porto, 4200-319, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Faculty of Medicine, Associate Laboratory i4HB-Institute for Health and Bioeconomy, University of Porto, 4200-319, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065775461","display_name":"Manuel Sim\u00f5es","orcid":"https://orcid.org/0000-0002-3355-4398"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Manuel Sim\u00f5es","raw_affiliation_strings":["Faculty of Engineering, ALiCE-Associate Laboratory in Chemical Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal","Faculty of Engineering, LEPABE Laboratory for Process Engineering, Environment, Biotechnology and Energy, University of Porto, Rua Dr. Roberto Frias, s/n, Porto, 4200-465, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-3355-4398","affiliations":[{"raw_affiliation_string":"Faculty of Engineering, ALiCE-Associate Laboratory in Chemical Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Faculty of Engineering, LEPABE Laboratory for Process Engineering, Environment, Biotechnology and Energy, University of Porto, Rua Dr. Roberto Frias, s/n, Porto, 4200-465, Portugal","institution_ids":["https://openalex.org/I182534213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051693451","display_name":"Diogo Pratas","orcid":"https://orcid.org/0000-0003-1176-552X"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["FI","PT"],"is_corresponding":false,"raw_author_name":"Diogo Pratas","raw_affiliation_strings":["Department of Electronics, Telecommunications and Informatics, DETI, University of Aveiro, Aveiro, Portugal","Department of Virology, DoV, University of Helsinki, Helsinki, Finland","Institute of Electronics and Informatics Engineering of Aveiro, IEETA, University of Aveiro, Aveiro, Portugal"],"raw_orcid":"https://orcid.org/0000-0003-1176-552X","affiliations":[{"raw_affiliation_string":"Department of Electronics, Telecommunications and Informatics, DETI, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"Department of Virology, DoV, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Institute of Electronics and Informatics Engineering of Aveiro, IEETA, University of Aveiro, Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014536242","display_name":"S\u00e9rgio F. Sousa","orcid":null},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"S\u00e9rgio F. Sousa","raw_affiliation_strings":["Department of Biomedicine, Faculty of Medicine, UCIBIO-Applied Molecular Biosciences Unit, University of Porto, BioSIM, Porto, 4200-319, Portugal","Faculty of Medicine, Associate Laboratory i4HB-Institute for Health and Bioeconomy, University of Porto, 4200-319, Porto, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-6560-5284","affiliations":[{"raw_affiliation_string":"Department of Biomedicine, Faculty of Medicine, UCIBIO-Applied Molecular Biosciences Unit, University of Porto, BioSIM, Porto, 4200-319, Portugal","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Faculty of Medicine, Associate Laboratory i4HB-Institute for Health and Bioeconomy, University of Porto, 4200-319, Porto, Portugal","institution_ids":["https://openalex.org/I182534213"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5027520870"],"corresponding_institution_ids":["https://openalex.org/I182534213"],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":{"value":3690,"currency":"USD","value_usd":3690},"fwci":1.016,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.73600121,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"37","issue":"5-6","first_page":"265","last_page":"278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.9160476922988892},{"id":"https://openalex.org/keywords/chembl","display_name":"chEMBL","score":0.8507586121559143},{"id":"https://openalex.org/keywords/biofilm","display_name":"Biofilm","score":0.8424348831176758},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6304698586463928},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45253923535346985},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4266693890094757},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.38662615418434143},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.37161731719970703},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.3499118685722351},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33746662735939026},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33736535906791687},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30257803201675415},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20751020312309265},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.0797455906867981},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07711610198020935}],"concepts":[{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.9160476922988892},{"id":"https://openalex.org/C63222358","wikidata":"https://www.wikidata.org/wiki/Q6120337","display_name":"chEMBL","level":3,"score":0.8507586121559143},{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.8424348831176758},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6304698586463928},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45253923535346985},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4266693890094757},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.38662615418434143},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.37161731719970703},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.3499118685722351},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33746662735939026},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33736535906791687},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30257803201675415},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20751020312309265},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0797455906867981},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07711610198020935},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018441","descriptor_name":"Biofilms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1007/s10822-023-00505-5","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-023-00505-5","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00505-5.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:37085636","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37085636","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10232598","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10232598","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10232598/pdf/10822_2023_Article_505.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Aided Mol Des","raw_type":"Text"},{"id":"pmh:oai:helda.helsinki.fi:10138/358420","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/358420","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1007/s10822-023-00505-5","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-023-00505-5","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-023-00505-5.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1690109813","display_name":null,"funder_award_id":"57/2016","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2005636044","display_name":null,"funder_award_id":"UIDP/00511/2020 (LEPABE) and LA/P/0045/2020 (ALiCE)","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G253812421","display_name":null,"funder_award_id":"57/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2788280154","display_name":null,"funder_award_id":"CEECINST/00026/2018","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2975900969","display_name":null,"funder_award_id":"2020 \u2018","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G306962499","display_name":null,"funder_award_id":"Law 57/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3598300014","display_name":"In Silico Optimization of Biocatalysts for Plastic Biodegradation","funder_award_id":"2020.09087.BD","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4234559043","display_name":null,"funder_award_id":"UIDP/04378/2020 AND UIDB/04378/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4541367665","display_name":null,"funder_award_id":"UIDB/04423/2020 and UIDP/04423/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4612737018","display_name":null,"funder_award_id":"UIDP/04378/2020 and UIDB/04378/2020 (UCIBIO)","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4995043267","display_name":null,"funder_award_id":"UIDB/00127/2020 (IEETA)","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G511810977","display_name":null,"funder_award_id":"UIDB/04423/2020 and UIDP/04423/2020 (CIIMAR)","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5454278309","display_name":null,"funder_award_id":"/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6147775995","display_name":"Institute of Electronics and Informatics Engineering of Aveiro","funder_award_id":"UIDB/00127/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7373955429","display_name":null,"funder_award_id":"UIDP/00511/2020 (LEPABE) and LA/P/0045/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8402422940","display_name":null,"funder_award_id":"2020.01423.CEECIND","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320324086","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612"},{"id":"https://openalex.org/F4320329612","display_name":"Centro Interdisciplinar de Investiga\u00e7\u00e3o Marinha e Ambiental","ror":null},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4366722702.pdf"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W1555657499","https://openalex.org/W1678356000","https://openalex.org/W1908035770","https://openalex.org/W1968093954","https://openalex.org/W1971849220","https://openalex.org/W2009317737","https://openalex.org/W2013583229","https://openalex.org/W2031449719","https://openalex.org/W2043302685","https://openalex.org/W2080936059","https://openalex.org/W2094125466","https://openalex.org/W2104002254","https://openalex.org/W2119410664","https://openalex.org/W2121776789","https://openalex.org/W2122836009","https://openalex.org/W2123047270","https://openalex.org/W2134511029","https://openalex.org/W2138218836","https://openalex.org/W2155478691","https://openalex.org/W2157177751","https://openalex.org/W2158698691","https://openalex.org/W2159482845","https://openalex.org/W2159887157","https://openalex.org/W2163970869","https://openalex.org/W2263985732","https://openalex.org/W2344681634","https://openalex.org/W2362265365","https://openalex.org/W2472992541","https://openalex.org/W2481243666","https://openalex.org/W2562677145","https://openalex.org/W2593315129","https://openalex.org/W2736205799","https://openalex.org/W2753633147","https://openalex.org/W2758396470","https://openalex.org/W2769934873","https://openalex.org/W2793570275","https://openalex.org/W2795834923","https://openalex.org/W2806547269","https://openalex.org/W2809499620","https://openalex.org/W2887039457","https://openalex.org/W2889833466","https://openalex.org/W2915626801","https://openalex.org/W2917626761","https://openalex.org/W2937307539","https://openalex.org/W2945001860","https://openalex.org/W2948308941","https://openalex.org/W2957116182","https://openalex.org/W2982197252","https://openalex.org/W2987859548","https://openalex.org/W2997732858","https://openalex.org/W3022273933","https://openalex.org/W3027975282","https://openalex.org/W3028758218","https://openalex.org/W3080246987","https://openalex.org/W3086524105","https://openalex.org/W3099252273","https://openalex.org/W3107577893","https://openalex.org/W3111216799","https://openalex.org/W3121710192","https://openalex.org/W3130797433","https://openalex.org/W3139532774","https://openalex.org/W3154636575","https://openalex.org/W3168430821","https://openalex.org/W3168441055","https://openalex.org/W3174446023","https://openalex.org/W3177951765","https://openalex.org/W3189831819","https://openalex.org/W3194726356","https://openalex.org/W3199618438","https://openalex.org/W3199883166","https://openalex.org/W3205045018","https://openalex.org/W4207037245","https://openalex.org/W4210424320","https://openalex.org/W4214943162","https://openalex.org/W4221109081","https://openalex.org/W4226136840","https://openalex.org/W4229059436","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2800402488","https://openalex.org/W2155478691","https://openalex.org/W3005441379","https://openalex.org/W2756188369","https://openalex.org/W2377024769","https://openalex.org/W2365912673","https://openalex.org/W2984106036","https://openalex.org/W4321254242","https://openalex.org/W2745013929","https://openalex.org/W4385760073"],"abstract_inverted_index":{"Bacterial":[0],"biofilms":[1,51],"are":[2,10],"a":[3,19,54,101,126,159,167,177],"source":[4],"of":[5,36,87,100,112,161,176],"infectious":[6],"human":[7],"diseases":[8],"and":[9,24,196],"heavily":[11],"linked":[12],"to":[13,40,49,63,107,170],"antibiotic":[14],"resistance.":[15],"Pseudomonas":[16,42,122,139],"aeruginosa":[17,43],"is":[18,68,80,93,182],"multidrug-resistant":[20],"bacterium":[21],"widely":[22],"present":[23],"implicated":[25,134],"in":[26,57,135],"several":[27],"hospital-acquired":[28],"infections.":[29],"Over":[30],"the":[31,34,88,98,109,131,155,172],"last":[32],"years,":[33],"development":[35,99],"new":[37],"drugs":[38],"able":[39,62],"inhibit":[41],"by":[44,75,121,138],"interfering":[45],"with":[46,65,114,149],"its":[47],"ability":[48],"form":[50],"has":[52],"become":[53,204],"promising":[55],"strategy":[56],"drug":[58],"discovery.":[59],"Identifying":[60],"molecules":[61,74,113],"interfere":[64],"biofilm":[66,119,136],"formation":[67,120,137],"difficult,":[69],"but":[70],"further":[71],"developing":[72],"these":[73],"rationally":[76],"improving":[77],"their":[78],"activity":[79,117],"particularly":[81],"challenging,":[82],"as":[83,154,201],"it":[84],"requires":[85],"knowledge":[86],"specific":[89],"protein":[90,110],"target":[91,175],"that":[92],"inhibited.":[94],"This":[95],"work":[96],"describes":[97],"machine":[102],"learning":[103],"multitechnique":[104],"consensus":[105,168],"workflow":[106],"predict":[108,171],"targets":[111,133],"confirmed":[115,143],"inhibitory":[116],"against":[118],"aeruginosa.":[123,140],"It":[124],"uses":[125],"specialized":[127],"database":[128],"containing":[129],"all":[130],"known":[132],"The":[141,179],"experimentally":[142],"inhibitors":[144],"available":[145,184],"on":[146],"ChEMBL,":[147],"together":[148],"chemical":[150],"descriptors,":[151],"were":[152],"used":[153],"input":[156],"features":[157],"for":[158],"combination":[160],"nine":[162],"different":[163],"classification":[164],"models,":[165],"yielding":[166],"method":[169],"most":[173],"likely":[174],"ligand.":[178],"implemented":[180],"algorithm":[181],"freely":[183],"at":[185],"https://github.com/BioSIM-Research-Group/TargIDe":[186],"under":[187],"licence":[188],"GNU":[189],"General":[190],"Public":[191],"Licence":[192],"(GPL)":[193],"version":[194],"3":[195],"can":[197],"easily":[198],"be":[199],"improved":[200],"more":[202],"data":[203],"available.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
