{"id":"https://openalex.org/W4310700855","doi":"https://doi.org/10.1007/s10822-022-00494-x","title":"The slow but steady rise of binding free energy calculations in drug discovery","display_name":"The slow but steady rise of binding free energy calculations in drug discovery","publication_year":2022,"publication_date":"2022-12-05","ids":{"openalex":"https://openalex.org/W4310700855","doi":"https://doi.org/10.1007/s10822-022-00494-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/36469232"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-022-00494-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-022-00494-x","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019096017","display_name":"Huafeng Xu","orcid":"https://orcid.org/0000-0001-5447-0452"},"institutions":[{"id":"https://openalex.org/I4210161154","display_name":"Roivant Sciences (United States)","ror":"https://ror.org/04fqvjv52","country_code":"US","type":"company","lineage":["https://openalex.org/I4210115659","https://openalex.org/I4210161154"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Huafeng Xu","raw_affiliation_strings":["Roivant Discovery, 151 West 42nd Street, New York, NY, 10036, USA. huafeng@gmail.com","Roivant Discovery, 151 West 42nd Street, New York, NY, 10036, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roivant Discovery, 151 West 42nd Street, New York, NY, 10036, USA. huafeng@gmail.com","institution_ids":["https://openalex.org/I4210161154"]},{"raw_affiliation_string":"Roivant Discovery, 151 West 42nd Street, New York, NY, 10036, USA","institution_ids":["https://openalex.org/I4210161154"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5019096017"],"corresponding_institution_ids":["https://openalex.org/I4210161154"],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":null,"fwci":0.9405,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.72855126,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"37","issue":"2","first_page":"67","last_page":"74"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/binding-affinities","display_name":"Binding affinities","score":0.7663922309875488},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7586555480957031},{"id":"https://openalex.org/keywords/affinities","display_name":"Affinities","score":0.5676836371421814},{"id":"https://openalex.org/keywords/pharmaceutical-industry","display_name":"Pharmaceutical industry","score":0.5582460761070251},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4738267660140991},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.4492538869380951},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42689383029937744},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.41902679204940796},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.41110533475875854},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3863009810447693},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.36791765689849854},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.34115517139434814},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23454549908638},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23275265097618103},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.23127597570419312},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2019956409931183},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19236430525779724},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.16426268219947815},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1045452356338501},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1043233871459961},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.10250961780548096}],"concepts":[{"id":"https://openalex.org/C3018795828","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Binding affinities","level":3,"score":0.7663922309875488},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7586555480957031},{"id":"https://openalex.org/C2780283098","wikidata":"https://www.wikidata.org/wiki/Q4688960","display_name":"Affinities","level":2,"score":0.5676836371421814},{"id":"https://openalex.org/C2779652045","wikidata":"https://www.wikidata.org/wiki/Q507443","display_name":"Pharmaceutical industry","level":2,"score":0.5582460761070251},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4738267660140991},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.4492538869380951},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42689383029937744},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.41902679204940796},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.41110533475875854},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3863009810447693},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.36791765689849854},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.34115517139434814},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23454549908638},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23275265097618103},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.23127597570419312},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2019956409931183},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19236430525779724},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.16426268219947815},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1045452356338501},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1043233871459961},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.10250961780548096}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-022-00494-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-022-00494-x","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:36469232","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36469232","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4000000059604645,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":108,"referenced_works":["https://openalex.org/W619279939","https://openalex.org/W1031578623","https://openalex.org/W1625910593","https://openalex.org/W1910508441","https://openalex.org/W1970973025","https://openalex.org/W1975691556","https://openalex.org/W1976263218","https://openalex.org/W1978393297","https://openalex.org/W1990161102","https://openalex.org/W1992808181","https://openalex.org/W1995152253","https://openalex.org/W1998948060","https://openalex.org/W2007356023","https://openalex.org/W2010875534","https://openalex.org/W2011535686","https://openalex.org/W2019962781","https://openalex.org/W2023887973","https://openalex.org/W2024762727","https://openalex.org/W2030354390","https://openalex.org/W2035672721","https://openalex.org/W2041589278","https://openalex.org/W2042980919","https://openalex.org/W2050617474","https://openalex.org/W2063206968","https://openalex.org/W2064414576","https://openalex.org/W2072604508","https://openalex.org/W2075468840","https://openalex.org/W2077096083","https://openalex.org/W2081775931","https://openalex.org/W2084550263","https://openalex.org/W2088879148","https://openalex.org/W2092956715","https://openalex.org/W2093755925","https://openalex.org/W2094779443","https://openalex.org/W2096264060","https://openalex.org/W2103394918","https://openalex.org/W2128494768","https://openalex.org/W2140151763","https://openalex.org/W2144988984","https://openalex.org/W2154670681","https://openalex.org/W2155554859","https://openalex.org/W2222589778","https://openalex.org/W2313116527","https://openalex.org/W2319057313","https://openalex.org/W2323942455","https://openalex.org/W2338036129","https://openalex.org/W2515097834","https://openalex.org/W2523261467","https://openalex.org/W2529996553","https://openalex.org/W2541404351","https://openalex.org/W2552522590","https://openalex.org/W2556565974","https://openalex.org/W2560807575","https://openalex.org/W2560915683","https://openalex.org/W2564264868","https://openalex.org/W2578240541","https://openalex.org/W2621922190","https://openalex.org/W2729835112","https://openalex.org/W2730519791","https://openalex.org/W2740982646","https://openalex.org/W2762339476","https://openalex.org/W2772606519","https://openalex.org/W2773987374","https://openalex.org/W2802082456","https://openalex.org/W2885128148","https://openalex.org/W2891421253","https://openalex.org/W2900830509","https://openalex.org/W2950669909","https://openalex.org/W2967422457","https://openalex.org/W2972646529","https://openalex.org/W2981128300","https://openalex.org/W2985021042","https://openalex.org/W3000732243","https://openalex.org/W3008931679","https://openalex.org/W3010025299","https://openalex.org/W3016569773","https://openalex.org/W3027827456","https://openalex.org/W3027952504","https://openalex.org/W3043456144","https://openalex.org/W3046216634","https://openalex.org/W3047663514","https://openalex.org/W3054319032","https://openalex.org/W3086372695","https://openalex.org/W3087004338","https://openalex.org/W3089188177","https://openalex.org/W3092297806","https://openalex.org/W3098269892","https://openalex.org/W3100751385","https://openalex.org/W3105581675","https://openalex.org/W3105582718","https://openalex.org/W3106457125","https://openalex.org/W3111206976","https://openalex.org/W3123322699","https://openalex.org/W3126967313","https://openalex.org/W3135702490","https://openalex.org/W3149078497","https://openalex.org/W3155645147","https://openalex.org/W3164542691","https://openalex.org/W3177833247","https://openalex.org/W3179779234","https://openalex.org/W3180820756","https://openalex.org/W3208412650","https://openalex.org/W3214679520","https://openalex.org/W4207034159","https://openalex.org/W4220741237","https://openalex.org/W4252192031","https://openalex.org/W4281550352","https://openalex.org/W4285007565"],"related_works":["https://openalex.org/W3187200704","https://openalex.org/W2031259671","https://openalex.org/W3112966125","https://openalex.org/W2108080735","https://openalex.org/W1990832091","https://openalex.org/W2095596733","https://openalex.org/W4240532245","https://openalex.org/W4280649094","https://openalex.org/W1966443150","https://openalex.org/W1648190027"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
