{"id":"https://openalex.org/W4310641810","doi":"https://doi.org/10.1007/s10822-022-00493-y","title":"DeepCubist: Molecular Generator for Designing Peptidomimetics based on Complex three-dimensional scaffolds","display_name":"DeepCubist: Molecular Generator for Designing Peptidomimetics based on Complex three-dimensional scaffolds","publication_year":2022,"publication_date":"2022-12-03","ids":{"openalex":"https://openalex.org/W4310641810","doi":"https://doi.org/10.1007/s10822-022-00493-y","mag":"36462089","pmid":"https://pubmed.ncbi.nlm.nih.gov/36462089"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-022-00493-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-022-00493-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-022-00493-y.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10822-022-00493-y.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019481693","display_name":"Kohei Umedera","orcid":null},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE","JP"],"is_corresponding":false,"raw_author_name":"Kohei Umedera","raw_affiliation_strings":["Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany","School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007768420","display_name":"Atsushi Yoshimori","orcid":"https://orcid.org/0000-0003-3206-5143"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Atsushi Yoshimori","raw_affiliation_strings":["Institute for Theoretical Medicine, Inc, 26-1, Muraoka-Higashi 2-chome, 251-8555, Fujisawa, Kanagawa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Medicine, Inc, 26-1, Muraoka-Higashi 2-chome, 251-8555, Fujisawa, Kanagawa, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004157441","display_name":"Hengwei Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hengwei Chen","raw_affiliation_strings":["Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059170589","display_name":"Hiroyuki Kouji","orcid":"https://orcid.org/0000-0003-1908-8578"},"institutions":[{"id":"https://openalex.org/I188815454","display_name":"Oita University","ror":"https://ror.org/01nyv7k26","country_code":"JP","type":"education","lineage":["https://openalex.org/I188815454"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroyuki Kouji","raw_affiliation_strings":["Oita University Institute of Advanced Medicine, Inc, 17-20, Higashi Kasuga-machi, 870-0037, Oita City, Oita, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oita University Institute of Advanced Medicine, Inc, 17-20, Higashi Kasuga-machi, 870-0037, Oita City, Oita, Japan","institution_ids":["https://openalex.org/I188815454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071405443","display_name":"Hiroyuki Nakamura","orcid":"https://orcid.org/0000-0002-4511-2984"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I4210111488","display_name":"Life Science Institute","ror":"https://ror.org/01yeyd808","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210111488"]},{"id":"https://openalex.org/I4210112104","display_name":"Innovative Research (United States)","ror":"https://ror.org/01zxe4w25","country_code":"US","type":"company","lineage":["https://openalex.org/I4210112104"]}],"countries":["JP","US"],"is_corresponding":true,"raw_author_name":"Hiroyuki Nakamura","raw_affiliation_strings":["Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan. hiro@res.titech.ac.jp","School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan. hiro@res.titech.ac.jp","Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan. hiro@res.titech.ac.jp","institution_ids":["https://openalex.org/I4210112104"]},{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan. hiro@res.titech.ac.jp","institution_ids":["https://openalex.org/I114531698"]},{"raw_affiliation_string":"Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259, Nagatsuta-cho, Midori-ku, 226-8503, Yokohama, Japan","institution_ids":["https://openalex.org/I114531698","https://openalex.org/I4210111488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039926688","display_name":"J\u00fcrgen Bajorath","orcid":"https://orcid.org/0000-0002-0557-5714"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"J\u00fcrgen Bajorath","raw_affiliation_strings":["Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany. bajorath@bit.uni-bonn.de","Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany. bajorath@bit.uni-bonn.de","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Department of Life Science Informatics, LIMES Program Unit Chemical Biology and Medicinal Chemistry, B-IT, Rheinische Friedrich-Wilhelms-Universit\u00e4t, Friedrich-Hirzebruch-Allee 5/6, D-53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039926688","https://openalex.org/A5071405443"],"corresponding_institution_ids":["https://openalex.org/I114531698","https://openalex.org/I135140700","https://openalex.org/I4210111488","https://openalex.org/I4210112104"],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":{"value":3690,"currency":"USD","value_usd":3690},"fwci":0.4705,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.58569933,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"37","issue":"2","first_page":"107","last_page":"115"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/peptidomimetic","display_name":"Peptidomimetic","score":0.9754745960235596},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.6367266178131104},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.5344504714012146},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.5057384967803955},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4675416350364685},{"id":"https://openalex.org/keywords/protein-design","display_name":"Protein design","score":0.4318270683288574},{"id":"https://openalex.org/keywords/rational-design","display_name":"Rational design","score":0.4202168583869934},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.4049752354621887},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3213994801044464},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3012749254703522},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.20815709233283997},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.18478462100028992},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12388396263122559},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10654547810554504}],"concepts":[{"id":"https://openalex.org/C124790011","wikidata":"https://www.wikidata.org/wiki/Q2069797","display_name":"Peptidomimetic","level":3,"score":0.9754745960235596},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.6367266178131104},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.5344504714012146},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.5057384967803955},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4675416350364685},{"id":"https://openalex.org/C152769699","wikidata":"https://www.wikidata.org/wiki/Q410814","display_name":"Protein design","level":3,"score":0.4318270683288574},{"id":"https://openalex.org/C53105671","wikidata":"https://www.wikidata.org/wiki/Q14777816","display_name":"Rational design","level":2,"score":0.4202168583869934},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.4049752354621887},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3213994801044464},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3012749254703522},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.20815709233283997},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.18478462100028992},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12388396263122559},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10654547810554504},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D057786","descriptor_name":"Peptidomimetics","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D057786","descriptor_name":"Peptidomimetics","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D057786","descriptor_name":"Peptidomimetics","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1007/s10822-022-00493-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-022-00493-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-022-00493-y.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"mag:36462089","is_oa":false,"landing_page_url":"http://www.aacademica.org/000-051/17","pdf_url":null,"source":{"id":"https://openalex.org/S4306535112","display_name":"XII Jornadas de Investigaci\u00f3n y Primer Encuentro de Investigadores en Psicolog\u00eda del Mercosur","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"XII Jornadas de Investigaci\u00f3n y Primer Encuentro de Investigadores en Psicolog\u00eda del Mercosur","raw_type":null},{"id":"pmid:36462089","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36462089","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9876871","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9876871","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Aided Mol Des","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10822-022-00493-y","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-022-00493-y","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-022-00493-y.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5564106209","display_name":"\u4e09\u6b21\u5143\u9aa8\u683c\u3092\u57fa\u76e4\u3068\u3057\u305f\u30da\u30d7\u30c1\u30c9\u6a21\u5023\u5206\u5b50\u306e\u958b\u767a\u3068PPI\u963b\u5bb3\u5264\u3078\u306e\u5c55\u958b","funder_award_id":"22KJ1298","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5736122488","display_name":"Development of 3D skeleton compound library targeting protein-protein interaction","funder_award_id":"22K19104","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320324900","display_name":"Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn","ror":"https://ror.org/041nas322"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4310641810.pdf","grobid_xml":"https://content.openalex.org/works/W4310641810.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1576533924","https://openalex.org/W1767659454","https://openalex.org/W1974715712","https://openalex.org/W1975147762","https://openalex.org/W2048284172","https://openalex.org/W2055329982","https://openalex.org/W2060531713","https://openalex.org/W2113456624","https://openalex.org/W2114850508","https://openalex.org/W2160592148","https://openalex.org/W2197008132","https://openalex.org/W2784270883","https://openalex.org/W2900090807","https://openalex.org/W2916581152","https://openalex.org/W2989615256","https://openalex.org/W2995707483","https://openalex.org/W3030948478","https://openalex.org/W3087716567","https://openalex.org/W3091244987","https://openalex.org/W3112113844","https://openalex.org/W3118695441","https://openalex.org/W3160789623","https://openalex.org/W4212767742","https://openalex.org/W4229040393","https://openalex.org/W4234402774","https://openalex.org/W4295312788"],"related_works":["https://openalex.org/W1577224463","https://openalex.org/W4317815001","https://openalex.org/W2116266427","https://openalex.org/W2800027457","https://openalex.org/W1534529517","https://openalex.org/W2554214300","https://openalex.org/W3184152800","https://openalex.org/W2512252615","https://openalex.org/W3215076145","https://openalex.org/W2169856792"],"abstract_inverted_index":{"Mimicking":[0],"bioactive":[1,49],"conformations":[2],"of":[3,10,26,36,111],"peptide":[4,50,75,113],"segments":[5],"involved":[6],"in":[7,41,119,123],"the":[8,24,34,94],"formation":[9],"protein-protein":[11,27],"interfaces":[12],"with":[13],"small":[14],"molecules":[15],"is":[16],"thought":[17],"to":[18,46,77,101,108],"represent":[19],"a":[20,56,73,79,97],"promising":[21],"strategy":[22],"for":[23,59,83],"design":[25,109],"interaction":[28],"(PPI)":[29],"inhibitors.":[30],"For":[31],"compound":[32],"design,":[33],"use":[35],"three-dimensional":[37],"(3D)":[38],"scaffolds":[39,69],"rich":[40],"sp3-centers":[42],"makes":[43],"it":[44],"possible":[45],"precisely":[47],"mimic":[48],"conformations.":[51],"Herein,":[52],"we":[53],"introduce":[54],"DeepCubist,":[55],"molecular":[57],"generator":[58],"designing":[60,84],"peptidomimetics":[61,110],"based":[62],"on":[63,72],"3D":[64,68],"scaffolds.":[65],"Firstly,":[66],"enumerated":[67],"are":[70,91],"superposed":[71],"target":[74],"conformation":[76],"identify":[78],"preferred":[80],"template":[81,95],"structure":[82],"peptidomimetics.":[85],"Secondly,":[86],"heteroatoms":[87],"and":[88,116],"unsaturated":[89],"bonds":[90],"introduced":[92],"into":[93],"via":[96],"deep":[98],"generative":[99],"model":[100],"produce":[102],"candidate":[103],"compounds.":[104],"DeepCubist":[105],"was":[106],"applied":[107],"exemplary":[112],"turn,":[114],"helix,":[115],"loop":[117],"structures":[118],"pharmaceutical":[120],"targets":[121],"engaging":[122],"PPIs.":[124]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3}],"updated_date":"2026-07-31T08:31:51.225901","created_date":"2025-10-10T00:00:00"}
