{"id":"https://openalex.org/W4220662284","doi":"https://doi.org/10.1007/s10822-022-00448-3","title":"Affinity prediction using deep learning based on SMILES input for D3R grand challenge 4","display_name":"Affinity prediction using deep learning based on SMILES input for D3R grand challenge 4","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4220662284","doi":"https://doi.org/10.1007/s10822-022-00448-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/35314897"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-022-00448-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-022-00448-3","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027154274","display_name":"Sangrak Lim","orcid":"https://orcid.org/0000-0001-5112-7907"},"institutions":[{"id":"https://openalex.org/I4210094302","display_name":"KIST Europe","ror":"https://ror.org/00p3ce068","country_code":"DE","type":"facility","lineage":["https://openalex.org/I27494661","https://openalex.org/I2801339556","https://openalex.org/I2801339556","https://openalex.org/I4210094302","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I4387152098","https://openalex.org/I58716616"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Sangrak Lim","raw_affiliation_strings":["Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany. sangrak.lim@kist-europe.de","Kist Europe, Saarbr\u00fccken\n, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5112-7907","affiliations":[{"raw_affiliation_string":"Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany. sangrak.lim@kist-europe.de","institution_ids":["https://openalex.org/I4210094302"]},{"raw_affiliation_string":"Kist Europe, Saarbr\u00fccken\n, Germany","institution_ids":["https://openalex.org/I4210094302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033484092","display_name":"Yong Oh Lee","orcid":"https://orcid.org/0000-0003-3817-3620"},"institutions":[{"id":"https://openalex.org/I4210094302","display_name":"KIST Europe","ror":"https://ror.org/00p3ce068","country_code":"DE","type":"facility","lineage":["https://openalex.org/I27494661","https://openalex.org/I2801339556","https://openalex.org/I2801339556","https://openalex.org/I4210094302","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I4387152098","https://openalex.org/I58716616"]},{"id":"https://openalex.org/I94588446","display_name":"Hongik University","ror":"https://ror.org/00egdv862","country_code":"KR","type":"education","lineage":["https://openalex.org/I94588446"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Yong Oh Lee","raw_affiliation_strings":["Industrial and Data Engineering Department of Hongik University, Seoul, Republic of Korea","Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany","Kist Europe, Saarbr\u00fccken\n, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Industrial and Data Engineering Department of Hongik University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I94588446"]},{"raw_affiliation_string":"Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany","institution_ids":["https://openalex.org/I4210094302"]},{"raw_affiliation_string":"Kist Europe, Saarbr\u00fccken\n, Germany","institution_ids":["https://openalex.org/I4210094302"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090327840","display_name":"Juyong Yoon","orcid":"https://orcid.org/0000-0002-6617-0083"},"institutions":[{"id":"https://openalex.org/I4210094302","display_name":"KIST Europe","ror":"https://ror.org/00p3ce068","country_code":"DE","type":"facility","lineage":["https://openalex.org/I27494661","https://openalex.org/I2801339556","https://openalex.org/I2801339556","https://openalex.org/I4210094302","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I4387152098","https://openalex.org/I58716616"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Juyong Yoon","raw_affiliation_strings":["Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany","Kist Europe, Saarbr\u00fccken\n, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany","institution_ids":["https://openalex.org/I4210094302"]},{"raw_affiliation_string":"Kist Europe, Saarbr\u00fccken\n, Germany","institution_ids":["https://openalex.org/I4210094302"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021167506","display_name":"Young Jun Kim","orcid":"https://orcid.org/0000-0003-2605-0922"},"institutions":[{"id":"https://openalex.org/I4210094302","display_name":"KIST Europe","ror":"https://ror.org/00p3ce068","country_code":"DE","type":"facility","lineage":["https://openalex.org/I27494661","https://openalex.org/I2801339556","https://openalex.org/I2801339556","https://openalex.org/I4210094302","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I4387152098","https://openalex.org/I58716616"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Young Jun Kim","raw_affiliation_strings":["Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany","Kist Europe, Saarbr\u00fccken\n, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kist Europe, Campus E7 1 66123, Saarbr\u00fccken , Germany","institution_ids":["https://openalex.org/I4210094302"]},{"raw_affiliation_string":"Kist Europe, Saarbr\u00fccken\n, Germany","institution_ids":["https://openalex.org/I4210094302"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5027154274"],"corresponding_institution_ids":["https://openalex.org/I4210094302"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.7542,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.72955678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"36","issue":"3","first_page":"225","last_page":"235"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.641804575920105},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6279839277267456},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6037960648536682},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5505514144897461},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.45029374957084656},{"id":"https://openalex.org/keywords/bipartite-graph","display_name":"Bipartite graph","score":0.43305543065071106},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.43136686086654663},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4266379177570343},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.3832922875881195},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32080304622650146},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.09047168493270874}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.641804575920105},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6279839277267456},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6037960648536682},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5505514144897461},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.45029374957084656},{"id":"https://openalex.org/C197657726","wikidata":"https://www.wikidata.org/wiki/Q174733","display_name":"Bipartite graph","level":3,"score":0.43305543065071106},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.43136686086654663},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4266379177570343},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.3832922875881195},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32080304622650146},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.09047168493270874},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-022-00448-3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-022-00448-3","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:35314897","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35314897","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5631632981","display_name":null,"funder_award_id":"CAP-17-01-KIST Europe","funder_id":"https://openalex.org/F4320325370","funder_display_name":"National Research Council of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320325370","display_name":"National Research Council of Science and Technology","ror":"https://ror.org/058rymf81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1964981516","https://openalex.org/W1981039770","https://openalex.org/W1985588649","https://openalex.org/W1988037271","https://openalex.org/W2015688756","https://openalex.org/W2045873232","https://openalex.org/W2046850956","https://openalex.org/W2096541451","https://openalex.org/W2114162221","https://openalex.org/W2121895929","https://openalex.org/W2121972740","https://openalex.org/W2161381512","https://openalex.org/W2191029871","https://openalex.org/W2244785476","https://openalex.org/W2512901842","https://openalex.org/W2583907533","https://openalex.org/W2594183968","https://openalex.org/W2755092455","https://openalex.org/W2784213390","https://openalex.org/W2885844162","https://openalex.org/W2889952976","https://openalex.org/W2902812092","https://openalex.org/W2910318997","https://openalex.org/W2921262115","https://openalex.org/W2974531988","https://openalex.org/W2978132989","https://openalex.org/W3002363522","https://openalex.org/W3005769002","https://openalex.org/W3006541846","https://openalex.org/W3025539670","https://openalex.org/W3082411326","https://openalex.org/W3098189759","https://openalex.org/W3102059167","https://openalex.org/W3106162654","https://openalex.org/W3109549311","https://openalex.org/W3165548596","https://openalex.org/W4211218502","https://openalex.org/W4254751698","https://openalex.org/W6601365666"],"related_works":["https://openalex.org/W4312200629","https://openalex.org/W4223943233","https://openalex.org/W4360585206","https://openalex.org/W4364306694","https://openalex.org/W4380086463","https://openalex.org/W4309045103","https://openalex.org/W4225161397","https://openalex.org/W3014300295","https://openalex.org/W3164822677","https://openalex.org/W4250304930"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
