{"id":"https://openalex.org/W3123205007","doi":"https://doi.org/10.1007/s10822-020-00370-6","title":"Testing automatic methods to predict free binding energy of host\u2013guest complexes in SAMPL7 challenge","display_name":"Testing automatic methods to predict free binding energy of host\u2013guest complexes in SAMPL7 challenge","publication_year":2021,"publication_date":"2021-01-19","ids":{"openalex":"https://openalex.org/W3123205007","doi":"https://doi.org/10.1007/s10822-020-00370-6","mag":"3123205007","pmid":"https://pubmed.ncbi.nlm.nih.gov/33464434"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-020-00370-6","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-020-00370-6","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-020-00370-6.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10822-020-00370-6.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041940104","display_name":"Dylan S\u00e9rillon","orcid":"https://orcid.org/0000-0002-4722-9529"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210096046","display_name":"Institut de Chimie de Strasbourg","ror":"https://ror.org/00se7bf12","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096046","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4388891874","display_name":"Institut de Biomedicina de la Universitat de Barcelona","ror":"https://ror.org/01y43zx14","country_code":null,"type":"education","lineage":["https://openalex.org/I4388891874","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES","FR"],"is_corresponding":true,"raw_author_name":"Dylan Serillon","raw_affiliation_strings":["Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Av. Joan XXIII 27-31, 08028, Barcelona, Spain. dylan.serillon@gmail.com","Laboratoire de Synth\u00e8se des Assemblages Mol\u00e9culaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS/UMR 7177, Universit\u00e9 de Strasbourg, Strasbourg, France. dylan.serillon@gmail.com","Laboratoire de Synth\u00e8se des Assemblages Mol\u00e9culaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS/UMR 7177, Universit\u00e9 de Strasbourg, Strasbourg, France","Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0002-4722-9529","affiliations":[{"raw_affiliation_string":"Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Av. Joan XXIII 27-31, 08028, Barcelona, Spain. dylan.serillon@gmail.com","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Laboratoire de Synth\u00e8se des Assemblages Mol\u00e9culaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS/UMR 7177, Universit\u00e9 de Strasbourg, Strasbourg, France. dylan.serillon@gmail.com","institution_ids":["https://openalex.org/I4210096046","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire de Synth\u00e8se des Assemblages Mol\u00e9culaires Multifonctionnels, Institut de Chimie de Strasbourg, CNRS/UMR 7177, Universit\u00e9 de Strasbourg, Strasbourg, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I4210096046","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I71999127","https://openalex.org/I4388891874"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011694384","display_name":"Carles B\u00f3","orcid":"https://orcid.org/0000-0001-9581-2922"},"institutions":[{"id":"https://openalex.org/I4210088955","display_name":"Institut Catal\u00e0 d'Investigaci\u00f3 Qu\u00edmica","ror":"https://ror.org/013j2zh96","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210088955","https://openalex.org/I4210132884","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carles Bo","raw_affiliation_strings":["Institut Catal\u00e0 d'Investigaci\u00f3 Qu\u00edmica (ICIQ), The Barcelona Institute of Science and Technology, Av. Pa\u00efsos Catalans, 17, 43007, Tarragona, Spain","Institut Catal\u00e0 d'Investigaci\u00f3 Qu\u00edmica (ICIQ), The Barcelona Institute of Science and Technology, Tarragona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Catal\u00e0 d'Investigaci\u00f3 Qu\u00edmica (ICIQ), The Barcelona Institute of Science and Technology, Av. Pa\u00efsos Catalans, 17, 43007, Tarragona, Spain","institution_ids":["https://openalex.org/I4210088955"]},{"raw_affiliation_string":"Institut Catal\u00e0 d'Investigaci\u00f3 Qu\u00edmica (ICIQ), The Barcelona Institute of Science and Technology, Tarragona, Spain","institution_ids":["https://openalex.org/I4210088955"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037789245","display_name":"Xavier Barril","orcid":"https://orcid.org/0000-0002-0281-1347"},"institutions":[{"id":"https://openalex.org/I11932220","display_name":"Instituci\u00f3 Catalana de Recerca i Estudis Avan\u00e7ats","ror":"https://ror.org/0371hy230","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I11932220"]},{"id":"https://openalex.org/I4388891874","display_name":"Institut de Biomedicina de la Universitat de Barcelona","ror":"https://ror.org/01y43zx14","country_code":null,"type":"education","lineage":["https://openalex.org/I4388891874","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Xavier Barril","raw_affiliation_strings":["Catalan Institution for Research and Advanced Studies (ICREA), Passeig Lluis Companys 23, 08010, Barcelona, Spain","Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Av. Joan XXIII 27-31, 08028, Barcelona, Spain","Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain","Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Catalan Institution for Research and Advanced Studies (ICREA), Passeig Lluis Companys 23, 08010, Barcelona, Spain","institution_ids":["https://openalex.org/I11932220"]},{"raw_affiliation_string":"Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Av. Joan XXIII 27-31, 08028, Barcelona, Spain","institution_ids":["https://openalex.org/I4388891874","https://openalex.org/I71999127"]},{"raw_affiliation_string":"Institut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Barcelona, Spain","institution_ids":["https://openalex.org/I71999127","https://openalex.org/I4388891874"]},{"raw_affiliation_string":"Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain","institution_ids":["https://openalex.org/I11932220"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5041940104"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210096046","https://openalex.org/I4388891874","https://openalex.org/I68947357","https://openalex.org/I71999127"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":{"value":2890,"currency":"EUR","value_usd":3690},"fwci":0.9609,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.70916637,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"35","issue":"2","first_page":"209","last_page":"222"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12827","display_name":"Biochemical and Molecular Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6882562637329102},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6491914391517639},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6374542713165283},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.6333807706832886},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45564067363739014},{"id":"https://openalex.org/keywords/supramolecular-chemistry","display_name":"Supramolecular chemistry","score":0.4483014941215515},{"id":"https://openalex.org/keywords/degrees-of-freedom","display_name":"Degrees of freedom (physics and chemistry)","score":0.42362356185913086},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3823358118534088},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34090226888656616},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33700302243232727},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3263733386993408},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.250501811504364},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.23480907082557678},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.15102532505989075},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1266835331916809},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10241204500198364}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6882562637329102},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6491914391517639},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6374542713165283},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.6333807706832886},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45564067363739014},{"id":"https://openalex.org/C93275456","wikidata":"https://www.wikidata.org/wiki/Q756449","display_name":"Supramolecular chemistry","level":3,"score":0.4483014941215515},{"id":"https://openalex.org/C208081375","wikidata":"https://www.wikidata.org/wiki/Q274502","display_name":"Degrees of freedom (physics and chemistry)","level":2,"score":0.42362356185913086},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3823358118534088},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34090226888656616},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33700302243232727},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3263733386993408},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.250501811504364},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.23480907082557678},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.15102532505989075},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1266835331916809},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10241204500198364},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1007/s10822-020-00370-6","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-020-00370-6","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-020-00370-6.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:33464434","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33464434","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:zenodo.org:7353591","is_oa":true,"landing_page_url":"https://zenodo.org/record/7353591","pdf_url":"https://zenodo.org/record/7353591","source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7904704","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7904704","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Aided Mol Des","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10822-020-00370-6","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-020-00370-6","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-020-00370-6.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2001806450","display_name":null,"funder_award_id":"H2020-MSCA-ITN","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2049247751","display_name":null,"funder_award_id":"765297","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2484171521","display_name":null,"funder_award_id":"765297","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G3345895242","display_name":null,"funder_award_id":"H2020-MSCA","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7984235579","display_name":null,"funder_award_id":"H2020-MSCA-ITN","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G8397103474","display_name":null,"funder_award_id":"765297","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"},{"id":"https://openalex.org/G8512683158","display_name":null,"funder_award_id":"H2020-MSCA","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335254","display_name":"Horizon 2020","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3123205007.pdf","grobid_xml":"https://content.openalex.org/works/W3123205007.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W54592505","https://openalex.org/W273955616","https://openalex.org/W654652841","https://openalex.org/W1031578623","https://openalex.org/W1480151146","https://openalex.org/W1513618424","https://openalex.org/W1605578858","https://openalex.org/W1762161369","https://openalex.org/W1966078827","https://openalex.org/W1966363041","https://openalex.org/W1981021420","https://openalex.org/W1983932107","https://openalex.org/W1990627326","https://openalex.org/W1993248675","https://openalex.org/W2006315618","https://openalex.org/W2021827099","https://openalex.org/W2023834022","https://openalex.org/W2033387736","https://openalex.org/W2035266068","https://openalex.org/W2037535298","https://openalex.org/W2050777682","https://openalex.org/W2052750593","https://openalex.org/W2056617023","https://openalex.org/W2057477511","https://openalex.org/W2060079863","https://openalex.org/W2075720910","https://openalex.org/W2085487477","https://openalex.org/W2087271871","https://openalex.org/W2093426296","https://openalex.org/W2095719702","https://openalex.org/W2098841537","https://openalex.org/W2109415161","https://openalex.org/W2123768693","https://openalex.org/W2127760066","https://openalex.org/W2134967712","https://openalex.org/W2147993766","https://openalex.org/W2160544821","https://openalex.org/W2171268876","https://openalex.org/W2311078281","https://openalex.org/W2492804765","https://openalex.org/W2549286116","https://openalex.org/W2582743722","https://openalex.org/W2605801743","https://openalex.org/W2608559058","https://openalex.org/W2748417965","https://openalex.org/W2896801232","https://openalex.org/W2911997094","https://openalex.org/W2936033307","https://openalex.org/W2947426432","https://openalex.org/W2947624929","https://openalex.org/W2951039542","https://openalex.org/W2952635193","https://openalex.org/W2964144387","https://openalex.org/W3012535303","https://openalex.org/W3088048367","https://openalex.org/W3088517836","https://openalex.org/W3092613274","https://openalex.org/W3103730625","https://openalex.org/W4230458820","https://openalex.org/W4308067211","https://openalex.org/W6630070186"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3122845970","https://openalex.org/W2992516105","https://openalex.org/W4224009465","https://openalex.org/W1578603832","https://openalex.org/W4286629047","https://openalex.org/W4306321456","https://openalex.org/W4285260836","https://openalex.org/W3046775127"],"abstract_inverted_index":{"The":[0,104,133],"design":[1,49,82],"of":[2,31,38,50,111,127,130,151,159,176,178,195],"new":[3,19,51,57],"host-guest":[4,40,170],"complexes":[5],"represents":[6],"a":[7,44,61,69,83,100,122,173],"fundamental":[8,187],"challenge":[9,76,185],"in":[10,21,47,181],"supramolecular":[11],"chemistry.":[12],"At":[13],"the":[14,34,48,74,128,131,137,157,160,182,190,196],"same":[15],"time,":[16],"it":[17],"opens":[18],"opportunities":[20],"material":[22],"sciences":[23],"or":[24,54,99],"biotechnological":[25],"applications.":[26],"A":[27],"computational":[28,85],"tool":[29],"capable":[30],"automatically":[32],"predicting":[33],"binding":[35,162],"free":[36],"energy":[37],"any":[39],"complex":[41],"would":[42],"be":[43,89,166,199],"great":[45],"aid":[46],"host":[52],"systems,":[53],"to":[55,66,77,119,189],"identify":[56,120],"guest":[58],"molecules":[59],"for":[60,169],"given":[62],"host.":[63],"We":[64],"aim":[65],"build":[67],"such":[68],"platform":[70],"and":[71,81,145],"have":[72],"used":[73],"SAMPL7":[75,184],"test":[78],"several":[79],"methods":[80],"specific":[84,123],"pipeline.":[86],"Predictions":[87],"will":[88,115,198],"based":[90],"on":[91,156],"machine":[92],"learning":[93],"(when":[94],"previous":[95],"knowledge":[96],"is":[97,125,135],"available)":[98],"physics-based":[101],"method":[102],"(otherwise).":[103],"formerly":[105],"delivered":[106],"predictions":[107,149],"with":[108,141,172],"an":[109],"RMSE":[110],"1.67":[112],"kcal/mol":[113],"but":[114],"require":[116],"further":[117],"work":[118],"when":[121],"system":[124],"outside":[126],"scope":[129],"model.":[132],"latter":[134],"combines":[136],"semiempirical":[138],"GFN2B":[139],"functional,":[140],"docking,":[142],"molecular":[143,146],"mechanics,":[144],"dynamics.":[147],"Correct":[148],"(RMSE":[150],"1.45":[152],"kcal/mol)":[153],"are":[154],"contingent":[155],"identification":[158],"correct":[161],"mode,":[163],"which":[164],"can":[165],"very":[167],"challenging":[168],"systems":[171],"large":[174],"number":[175],"degrees":[177],"freedom.":[179],"Participation":[180],"blind":[183],"provided":[186],"direction":[188],"project.":[191],"More":[192],"advanced":[193],"versions":[194],"pipeline":[197],"tested":[200],"against":[201],"future":[202],"SAMPL":[203],"challenges.":[204]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
