{"id":"https://openalex.org/W2563474895","doi":"https://doi.org/10.1007/s10822-016-9999-8","title":"Fast H-DROP: A thirty times accelerated version of H-DROP for interactive SVM-based prediction of helical domain linkers","display_name":"Fast H-DROP: A thirty times accelerated version of H-DROP for interactive SVM-based prediction of helical domain linkers","publication_year":2016,"publication_date":"2016-12-27","ids":{"openalex":"https://openalex.org/W2563474895","doi":"https://doi.org/10.1007/s10822-016-9999-8","mag":"2563474895","pmid":"https://pubmed.ncbi.nlm.nih.gov/28028736"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-016-9999-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-016-9999-8","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011092760","display_name":"Richa Tambi","orcid":"https://orcid.org/0000-0003-2405-2991"},"institutions":[{"id":"https://openalex.org/I92614990","display_name":"Tokyo University of Agriculture and Technology","ror":"https://ror.org/00qg0kr10","country_code":"JP","type":"education","lineage":["https://openalex.org/I92614990"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tambi Richa","raw_affiliation_strings":["Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan","institution_ids":["https://openalex.org/I92614990"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070527889","display_name":"Soichiro Ide","orcid":"https://orcid.org/0000-0002-9112-2841"},"institutions":[{"id":"https://openalex.org/I92614990","display_name":"Tokyo University of Agriculture and Technology","ror":"https://ror.org/00qg0kr10","country_code":"JP","type":"education","lineage":["https://openalex.org/I92614990"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Soichiro Ide","raw_affiliation_strings":["Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan","institution_ids":["https://openalex.org/I92614990"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076971619","display_name":"Ryosuke Suzuki","orcid":null},"institutions":[{"id":"https://openalex.org/I92614990","display_name":"Tokyo University of Agriculture and Technology","ror":"https://ror.org/00qg0kr10","country_code":"JP","type":"education","lineage":["https://openalex.org/I92614990"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ryosuke Suzuki","raw_affiliation_strings":["Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan","institution_ids":["https://openalex.org/I92614990"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015640042","display_name":"Teppei Ebina","orcid":"https://orcid.org/0000-0002-3097-0513"},"institutions":[{"id":"https://openalex.org/I92614990","display_name":"Tokyo University of Agriculture and Technology","ror":"https://ror.org/00qg0kr10","country_code":"JP","type":"education","lineage":["https://openalex.org/I92614990"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Teppei Ebina","raw_affiliation_strings":["Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan","Department of Physiology, Graduate school of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan","institution_ids":["https://openalex.org/I92614990"]},{"raw_affiliation_string":"Department of Physiology, Graduate school of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010639542","display_name":"Yutaka Kuroda","orcid":"https://orcid.org/0000-0002-3221-4295"},"institutions":[{"id":"https://openalex.org/I92614990","display_name":"Tokyo University of Agriculture and Technology","ror":"https://ror.org/00qg0kr10","country_code":"JP","type":"education","lineage":["https://openalex.org/I92614990"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yutaka Kuroda","raw_affiliation_strings":["Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan. ykuroda@cc.tuat.ac.jp","Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan. ykuroda@cc.tuat.ac.jp","institution_ids":[]},{"raw_affiliation_string":"Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 12-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan","institution_ids":["https://openalex.org/I92614990"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5011092760"],"corresponding_institution_ids":["https://openalex.org/I92614990"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.1695,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65136596,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"31","issue":"2","first_page":"237","last_page":"244"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drop","display_name":"Drop (telecommunication)","score":0.8161927461624146},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5421891808509827},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4415161609649658},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3885500431060791},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.279155969619751}],"concepts":[{"id":"https://openalex.org/C2781345722","wikidata":"https://www.wikidata.org/wiki/Q5308388","display_name":"Drop (telecommunication)","level":2,"score":0.8161927461624146},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5421891808509827},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4415161609649658},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3885500431060791},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.279155969619751},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-016-9999-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-016-9999-8","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:28028736","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28028736","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6200000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W11646241","https://openalex.org/W273955616","https://openalex.org/W1541754351","https://openalex.org/W1543010007","https://openalex.org/W1543773936","https://openalex.org/W1627614749","https://openalex.org/W1973262365","https://openalex.org/W1987394729","https://openalex.org/W1989873812","https://openalex.org/W1991076792","https://openalex.org/W1994001097","https://openalex.org/W1995299392","https://openalex.org/W1996150123","https://openalex.org/W2003144438","https://openalex.org/W2005735942","https://openalex.org/W2008708467","https://openalex.org/W2010483820","https://openalex.org/W2013370478","https://openalex.org/W2016304185","https://openalex.org/W2027446338","https://openalex.org/W2037320703","https://openalex.org/W2046535373","https://openalex.org/W2057741472","https://openalex.org/W2059931612","https://openalex.org/W2060797027","https://openalex.org/W2076048958","https://openalex.org/W2076945013","https://openalex.org/W2092182190","https://openalex.org/W2104703176","https://openalex.org/W2105918397","https://openalex.org/W2107441346","https://openalex.org/W2116772258","https://openalex.org/W2119542589","https://openalex.org/W2129410760","https://openalex.org/W2134353698","https://openalex.org/W2138953240","https://openalex.org/W2139603922","https://openalex.org/W2140628140","https://openalex.org/W2141757982","https://openalex.org/W2144783537","https://openalex.org/W2147805410","https://openalex.org/W2149548330","https://openalex.org/W2152059523","https://openalex.org/W2153187042","https://openalex.org/W2165544410","https://openalex.org/W2472994153","https://openalex.org/W4213149192"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2090763504","https://openalex.org/W2382290278","https://openalex.org/W2478288626"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}