{"id":"https://openalex.org/W2050507210","doi":"https://doi.org/10.1007/s10822-014-9757-8","title":"Ligand efficiency metrics considered harmful","display_name":"Ligand efficiency metrics considered harmful","publication_year":2014,"publication_date":"2014-06-04","ids":{"openalex":"https://openalex.org/W2050507210","doi":"https://doi.org/10.1007/s10822-014-9757-8","mag":"2050507210","pmid":"https://pubmed.ncbi.nlm.nih.gov/24899110"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-014-9757-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-014-9757-8","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://dx.doi.org/10.1007/s10822-014-9757-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005482561","display_name":"Peter W. Kenny","orcid":"https://orcid.org/0000-0002-3105-2909"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Peter W. Kenny","raw_affiliation_strings":["Grupo de em Qu\u00edmica Medicinal do IQSC/USP - NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, Av. Trabalhador Sancarlense, 400, S\u00e3o Carlos, SP, 13566-590, Brazil, pwk.pub.2008@gmail.com","Grupo de em Qu\u00edmica Medicinal do IQSC/USP \u2013 NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grupo de em Qu\u00edmica Medicinal do IQSC/USP - NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, Av. Trabalhador Sancarlense, 400, S\u00e3o Carlos, SP, 13566-590, Brazil, pwk.pub.2008@gmail.com","institution_ids":["https://openalex.org/I17974374"]},{"raw_affiliation_string":"Grupo de em Qu\u00edmica Medicinal do IQSC/USP \u2013 NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040801454","display_name":"Andrei Leit\u00e3o","orcid":"https://orcid.org/0000-0002-6601-6609"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Andrei Leit\u00e3o","raw_affiliation_strings":["Grupo de em Qu\u00edmica Medicinal do IQSC/USP \u2013 NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grupo de em Qu\u00edmica Medicinal do IQSC/USP \u2013 NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039642161","display_name":"Carlos A. Montanari","orcid":"https://orcid.org/0000-0002-4963-0316"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Carlos A. Montanari","raw_affiliation_strings":["Grupo de em Qu\u00edmica Medicinal do IQSC/USP \u2013 NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grupo de em Qu\u00edmica Medicinal do IQSC/USP \u2013 NEQUIMED, Instituto de Qu\u00edmica de S\u00e3o Carlos, Universidade de S\u00e3o Paulo, S\u00e3o Carlos, Brazil","institution_ids":["https://openalex.org/I17974374"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I17974374"],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":null,"fwci":10.4745,"has_fulltext":false,"cited_by_count":66,"citation_normalized_percentile":{"value":0.98700296,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"28","issue":"7","first_page":"699","last_page":"710"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lipophilicity","display_name":"Lipophilicity","score":0.8578733205795288},{"id":"https://openalex.org/keywords/ligand-efficiency","display_name":"Ligand efficiency","score":0.8099468946456909},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.7034412622451782},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.6536394357681274},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.5599953532218933},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.4757920503616333},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4737582802772522},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.44026950001716614},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4251956641674042},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3920801877975464},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38693922758102417},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.18087628483772278},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17760321497917175},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1576593518257141},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.12832489609718323},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1124035120010376},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.07023268938064575}],"concepts":[{"id":"https://openalex.org/C201399114","wikidata":"https://www.wikidata.org/wiki/Q898401","display_name":"Lipophilicity","level":2,"score":0.8578733205795288},{"id":"https://openalex.org/C204171352","wikidata":"https://www.wikidata.org/wiki/Q6545861","display_name":"Ligand efficiency","level":4,"score":0.8099468946456909},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.7034412622451782},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.6536394357681274},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.5599953532218933},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.4757920503616333},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4737582802772522},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.44026950001716614},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4251956641674042},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3920801877975464},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38693922758102417},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.18087628483772278},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17760321497917175},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1576593518257141},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.12832489609718323},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1124035120010376},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.07023268938064575},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10822-014-9757-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-014-9757-8","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:24899110","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24899110","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:002501511","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s10822-014-9757-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da USP (Biblioteca Digital da Produ\u00e7\u00e3o Intelectual)","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:002501511","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1007/s10822-014-9757-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da USP (Biblioteca Digital da Produ\u00e7\u00e3o Intelectual)","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W330953206","https://openalex.org/W1797751593","https://openalex.org/W1963921133","https://openalex.org/W1967234247","https://openalex.org/W1971297095","https://openalex.org/W1971553338","https://openalex.org/W1974290383","https://openalex.org/W1974947009","https://openalex.org/W1975454917","https://openalex.org/W1977363854","https://openalex.org/W1978009405","https://openalex.org/W1980337077","https://openalex.org/W1981202673","https://openalex.org/W1990520277","https://openalex.org/W1992220387","https://openalex.org/W1996973304","https://openalex.org/W1998700502","https://openalex.org/W2001054421","https://openalex.org/W2004947911","https://openalex.org/W2008312146","https://openalex.org/W2008525757","https://openalex.org/W2014305911","https://openalex.org/W2014687677","https://openalex.org/W2017829285","https://openalex.org/W2019738597","https://openalex.org/W2021193002","https://openalex.org/W2023507136","https://openalex.org/W2025556769","https://openalex.org/W2025718938","https://openalex.org/W2026370952","https://openalex.org/W2032998461","https://openalex.org/W2039609876","https://openalex.org/W2041767096","https://openalex.org/W2047710091","https://openalex.org/W2058548484","https://openalex.org/W2060011480","https://openalex.org/W2060757367","https://openalex.org/W2061958431","https://openalex.org/W2062458432","https://openalex.org/W2063544208","https://openalex.org/W2074409801","https://openalex.org/W2086806820","https://openalex.org/W2087979964","https://openalex.org/W2088525065","https://openalex.org/W2090936831","https://openalex.org/W2090996511","https://openalex.org/W2115112246","https://openalex.org/W2116903488","https://openalex.org/W2117620409","https://openalex.org/W2125920799","https://openalex.org/W2127073449","https://openalex.org/W2127451270","https://openalex.org/W2128245586","https://openalex.org/W2135732933","https://openalex.org/W2141528038","https://openalex.org/W2152249789","https://openalex.org/W2156339506","https://openalex.org/W2163763334","https://openalex.org/W2166199238","https://openalex.org/W2173920250","https://openalex.org/W2210033643","https://openalex.org/W2299973047","https://openalex.org/W2326172157","https://openalex.org/W2346228108","https://openalex.org/W2950124390","https://openalex.org/W4248107770"],"related_works":["https://openalex.org/W2931930663","https://openalex.org/W2795712144","https://openalex.org/W2007239864","https://openalex.org/W2041767096","https://openalex.org/W4319081913","https://openalex.org/W2103299776","https://openalex.org/W1969073798","https://openalex.org/W2159850718","https://openalex.org/W2110306487","https://openalex.org/W1983611229"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
