{"id":"https://openalex.org/W2014609004","doi":"https://doi.org/10.1007/s10822-014-9746-y","title":"A functional feature analysis on diverse protein\u2013protein interactions: application for the prediction of binding affinity","display_name":"A functional feature analysis on diverse protein\u2013protein interactions: application for the prediction of binding affinity","publication_year":2014,"publication_date":"2014-04-30","ids":{"openalex":"https://openalex.org/W2014609004","doi":"https://doi.org/10.1007/s10822-014-9746-y","mag":"2014609004","pmid":"https://pubmed.ncbi.nlm.nih.gov/24789327"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-014-9746-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-014-9746-y","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061944036","display_name":"Jiesi Luo","orcid":"https://orcid.org/0000-0002-1199-7024"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiesi Luo","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People's Republic of China","College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People's Republic of China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693805","display_name":"Yanzhi Guo","orcid":"https://orcid.org/0000-0003-2087-2757"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yanzhi Guo","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067476334","display_name":"Yun Zhong","orcid":"https://orcid.org/0000-0002-6768-4393"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Zhong","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066913695","display_name":"Duo Ma","orcid":"https://orcid.org/0000-0001-5453-3652"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Duo Ma","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073580810","display_name":"Wenling Li","orcid":"https://orcid.org/0000-0002-9130-5736"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenling Li","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100703866","display_name":"Menglong Li","orcid":"https://orcid.org/0000-0001-7365-0344"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Menglong Li","raw_affiliation_strings":["College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Chemistry, Sichuan University, Chengdu, People\u2019s Republic of China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100693805","https://openalex.org/A5100703866"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":null,"fwci":1.2948,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.78380841,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"6","first_page":"619","last_page":"629"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5413134098052979},{"id":"https://openalex.org/keywords/transient","display_name":"Transient (computer programming)","score":0.5041619539260864},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4756186604499817},{"id":"https://openalex.org/keywords/plasma-protein-binding","display_name":"Plasma protein binding","score":0.47331702709198},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4259006679058075},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.4223952889442444},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42104586958885193},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.41681402921676636},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3519083261489868},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.23459258675575256},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20383301377296448},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16613474488258362}],"concepts":[{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5413134098052979},{"id":"https://openalex.org/C2780799671","wikidata":"https://www.wikidata.org/wiki/Q17087362","display_name":"Transient (computer programming)","level":2,"score":0.5041619539260864},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4756186604499817},{"id":"https://openalex.org/C51639874","wikidata":"https://www.wikidata.org/wiki/Q167149","display_name":"Plasma protein binding","level":2,"score":0.47331702709198},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4259006679058075},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.4223952889442444},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42104586958885193},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.41681402921676636},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3519083261489868},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.23459258675575256},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20383301377296448},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16613474488258362},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-014-9746-y","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-014-9746-y","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:24789327","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24789327","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W197436581","https://openalex.org/W1505394602","https://openalex.org/W1526151739","https://openalex.org/W1792865908","https://openalex.org/W1915490970","https://openalex.org/W1926568554","https://openalex.org/W1965916750","https://openalex.org/W1975580333","https://openalex.org/W1979966120","https://openalex.org/W2015094506","https://openalex.org/W2024138709","https://openalex.org/W2026418335","https://openalex.org/W2031772330","https://openalex.org/W2033114158","https://openalex.org/W2035503835","https://openalex.org/W2058017150","https://openalex.org/W2060619005","https://openalex.org/W2075770210","https://openalex.org/W2078302553","https://openalex.org/W2081639575","https://openalex.org/W2087181875","https://openalex.org/W2090035064","https://openalex.org/W2091326717","https://openalex.org/W2091563009","https://openalex.org/W2092285329","https://openalex.org/W2098416804","https://openalex.org/W2100070946","https://openalex.org/W2119521410","https://openalex.org/W2124013748","https://openalex.org/W2124036707","https://openalex.org/W2140875146","https://openalex.org/W2148512505","https://openalex.org/W2149301682","https://openalex.org/W2150192011","https://openalex.org/W2152830137","https://openalex.org/W2157733131","https://openalex.org/W2158100564","https://openalex.org/W2159580916","https://openalex.org/W2166496883","https://openalex.org/W2166663852","https://openalex.org/W2170872475","https://openalex.org/W2171371127","https://openalex.org/W4236268324","https://openalex.org/W4385126812"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2021226373","https://openalex.org/W2051123135","https://openalex.org/W2023370650","https://openalex.org/W2559132852","https://openalex.org/W4249364790","https://openalex.org/W2085543450","https://openalex.org/W4296139765","https://openalex.org/W2182143911"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
