{"id":"https://openalex.org/W2086946786","doi":"https://doi.org/10.1007/s10822-014-9713-7","title":"Testing and validation of the Automated Topology Builder (ATB) version 2.0: prediction of hydration free enthalpies","display_name":"Testing and validation of the Automated Topology Builder (ATB) version 2.0: prediction of hydration free enthalpies","publication_year":2014,"publication_date":"2014-01-29","ids":{"openalex":"https://openalex.org/W2086946786","doi":"https://doi.org/10.1007/s10822-014-9713-7","mag":"2086946786","pmid":"https://pubmed.ncbi.nlm.nih.gov/24477799"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-014-9713-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-014-9713-7","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061006246","display_name":"Katarzyna B. Koziara","orcid":null},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Katarzyna B. Koziara","raw_affiliation_strings":["School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052673134","display_name":"Martin Stroet","orcid":"https://orcid.org/0000-0002-9570-2376"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Martin Stroet","raw_affiliation_strings":["School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066959335","display_name":"Alpeshkumar K. Malde","orcid":"https://orcid.org/0000-0002-8181-1619"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Alpeshkumar K. Malde","raw_affiliation_strings":["School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060550957","display_name":"Alan E. Mark","orcid":"https://orcid.org/0000-0001-5880-4798"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Alan E. Mark","raw_affiliation_strings":["Institute for Molecular Bioscience, University of Queensland, St Lucia, QLD, 4072, Australia","School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Molecular Bioscience, University of Queensland, St Lucia, QLD, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia, QLD, 4072, Australia","institution_ids":["https://openalex.org/I165143802"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060550957"],"corresponding_institution_ids":["https://openalex.org/I165143802"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":37.3826,"has_fulltext":false,"cited_by_count":513,"citation_normalized_percentile":{"value":0.99892083,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"28","issue":"3","first_page":"221","last_page":"233"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mean-squared-error","display_name":"Mean squared error","score":0.6150521636009216},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.6066386699676514},{"id":"https://openalex.org/keywords/convergence","display_name":"Convergence (economics)","score":0.5852867960929871},{"id":"https://openalex.org/keywords/force-field","display_name":"Force field (fiction)","score":0.5222421884536743},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.45747941732406616},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4225800633430481},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4065287709236145},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4001055359840393},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3478381931781769},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3303370177745819},{"id":"https://openalex.org/keywords/thermodynamics","display_name":"Thermodynamics","score":0.32936856150627136},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2453676462173462},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17144030332565308},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.13361689448356628},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.11233383417129517},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10758814215660095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09218579530715942}],"concepts":[{"id":"https://openalex.org/C139945424","wikidata":"https://www.wikidata.org/wiki/Q1940696","display_name":"Mean squared error","level":2,"score":0.6150521636009216},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.6066386699676514},{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.5852867960929871},{"id":"https://openalex.org/C10803110","wikidata":"https://www.wikidata.org/wiki/Q1341441","display_name":"Force field (fiction)","level":2,"score":0.5222421884536743},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.45747941732406616},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4225800633430481},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4065287709236145},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4001055359840393},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3478381931781769},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3303370177745819},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.32936856150627136},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2453676462173462},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17144030332565308},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.13361689448356628},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.11233383417129517},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10758814215660095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09218579530715942},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10822-014-9713-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-014-9713-7","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:24477799","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24477799","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:323126","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320984","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W615005053","https://openalex.org/W1491824558","https://openalex.org/W1966363041","https://openalex.org/W1968583410","https://openalex.org/W1979453000","https://openalex.org/W1981021420","https://openalex.org/W1997772366","https://openalex.org/W2015688756","https://openalex.org/W2021032453","https://openalex.org/W2022950330","https://openalex.org/W2023271753","https://openalex.org/W2026428297","https://openalex.org/W2035266068","https://openalex.org/W2037788435","https://openalex.org/W2041791898","https://openalex.org/W2041902442","https://openalex.org/W2049079467","https://openalex.org/W2055238646","https://openalex.org/W2057491831","https://openalex.org/W2060189458","https://openalex.org/W2060433756","https://openalex.org/W2068465600","https://openalex.org/W2070753604","https://openalex.org/W2075720910","https://openalex.org/W2077954341","https://openalex.org/W2077973224","https://openalex.org/W2079916403","https://openalex.org/W2099099776","https://openalex.org/W2106140689","https://openalex.org/W2107029002","https://openalex.org/W2121853844","https://openalex.org/W2127336290","https://openalex.org/W2127522551","https://openalex.org/W2130479394","https://openalex.org/W2143981217","https://openalex.org/W2147421370","https://openalex.org/W2147958276","https://openalex.org/W2147993766","https://openalex.org/W2155358697","https://openalex.org/W2155554859","https://openalex.org/W2171268876","https://openalex.org/W2180688762","https://openalex.org/W2284118597","https://openalex.org/W2488677743","https://openalex.org/W2995037337"],"related_works":["https://openalex.org/W2102148524","https://openalex.org/W2314720829","https://openalex.org/W4385074335","https://openalex.org/W2626189183","https://openalex.org/W1968508988","https://openalex.org/W1517908938","https://openalex.org/W2626268514","https://openalex.org/W2072798552","https://openalex.org/W1996733108","https://openalex.org/W2084608148"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":56},{"year":2022,"cited_by_count":36},{"year":2021,"cited_by_count":65},{"year":2020,"cited_by_count":69},{"year":2019,"cited_by_count":55},{"year":2018,"cited_by_count":53},{"year":2017,"cited_by_count":56},{"year":2016,"cited_by_count":35},{"year":2015,"cited_by_count":18},{"year":2014,"cited_by_count":2}],"updated_date":"2026-06-16T09:24:06.705377","created_date":"2025-10-10T00:00:00"}
