{"id":"https://openalex.org/W1975570414","doi":"https://doi.org/10.1007/s10822-012-9575-9","title":"Docking performance of the glide program as evaluated on the Astex and DUD datasets: a complete set of glide SP results and selected results for a new scoring function integrating WaterMap and glide","display_name":"Docking performance of the glide program as evaluated on the Astex and DUD datasets: a complete set of glide SP results and selected results for a new scoring function integrating WaterMap and glide","publication_year":2012,"publication_date":"2012-05-10","ids":{"openalex":"https://openalex.org/W1975570414","doi":"https://doi.org/10.1007/s10822-012-9575-9","mag":"1975570414","pmid":"https://pubmed.ncbi.nlm.nih.gov/22576241"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-012-9575-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-012-9575-9","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004348015","display_name":"Matthew P. Repasky","orcid":"https://orcid.org/0000-0002-0259-7053"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]},{"id":"https://openalex.org/I4210161498","display_name":"Schrodinger (United States)","ror":null,"country_code":"US","type":null,"lineage":["https://openalex.org/I4210161498"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Matthew P. Repasky","raw_affiliation_strings":["Schr\u00f6dinger, LLC, 101 SW Main St., Portland, OR 97204, USA. matt.repasky@schrodinger.com","Schr\u00f6dinger, LLC, Portland, USA"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger, LLC, 101 SW Main St., Portland, OR 97204, USA. matt.repasky@schrodinger.com","institution_ids":["https://openalex.org/I4210161498"]},{"raw_affiliation_string":"Schr\u00f6dinger, LLC, Portland, USA","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109967717","display_name":"Robert B. Murphy","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161498","display_name":"Schrodinger (United States)","ror":null,"country_code":"US","type":null,"lineage":["https://openalex.org/I4210161498"]},{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert B. Murphy","raw_affiliation_strings":["Schr\u00f6dinger, LLC, 101 SW Main St., Portland, OR, 97204, USA","Schr\u00f6dinger, LLC, Portland, USA"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger, LLC, 101 SW Main St., Portland, OR, 97204, USA","institution_ids":["https://openalex.org/I4210161498"]},{"raw_affiliation_string":"Schr\u00f6dinger, LLC, Portland, USA","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030241381","display_name":"Jay L. Banks","orcid":null},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]},{"id":"https://openalex.org/I4210161498","display_name":"Schrodinger (United States)","ror":null,"country_code":"US","type":null,"lineage":["https://openalex.org/I4210161498"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jay L. Banks","raw_affiliation_strings":["Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","Schr\u00f6dinger, LLC, New York, USA"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","institution_ids":["https://openalex.org/I4210161498"]},{"raw_affiliation_string":"Schr\u00f6dinger, LLC, New York, USA","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084271064","display_name":"Jeremy R. Greenwood","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161498","display_name":"Schrodinger (United States)","ror":null,"country_code":"US","type":null,"lineage":["https://openalex.org/I4210161498"]},{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy R. Greenwood","raw_affiliation_strings":["Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","Schr\u00f6dinger, LLC, New York, USA"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","institution_ids":["https://openalex.org/I4210161498"]},{"raw_affiliation_string":"Schr\u00f6dinger, LLC, New York, USA","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069375617","display_name":"Ivan Tubert\u2010Brohman","orcid":"https://orcid.org/0009-0001-4637-4468"},"institutions":[{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]},{"id":"https://openalex.org/I4210161498","display_name":"Schrodinger (United States)","ror":null,"country_code":"US","type":null,"lineage":["https://openalex.org/I4210161498"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ivan Tubert-Brohman","raw_affiliation_strings":["Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","Schr\u00f6dinger, LLC, New York, USA"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","institution_ids":["https://openalex.org/I4210161498"]},{"raw_affiliation_string":"Schr\u00f6dinger, LLC, New York, USA","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022991788","display_name":"Sathesh Bhat","orcid":"https://orcid.org/0000-0003-1819-5726"},"institutions":[{"id":"https://openalex.org/I4210161498","display_name":"Schrodinger (United States)","ror":null,"country_code":"US","type":null,"lineage":["https://openalex.org/I4210161498"]},{"id":"https://openalex.org/I203455613","display_name":"Schrodinger (United States)","ror":"https://ror.org/05a3z6914","country_code":"US","type":"company","lineage":["https://openalex.org/I203455613"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sathesh Bhat","raw_affiliation_strings":["Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","Schr\u00f6dinger, LLC, New York, USA"],"affiliations":[{"raw_affiliation_string":"Schr\u00f6dinger, LLC, 120 West 45th St., New York, NY, 10036, USA","institution_ids":["https://openalex.org/I4210161498"]},{"raw_affiliation_string":"Schr\u00f6dinger, LLC, New York, USA","institution_ids":["https://openalex.org/I203455613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012437524","display_name":"Richard A. Friesner","orcid":"https://orcid.org/0000-0002-1708-9342"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard A. Friesner","raw_affiliation_strings":["Department of Chemistry, Columbia University, New York, NY, 10036, USA","Department of Chemistry Columbia University  New York USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Columbia University, New York, NY, 10036, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Chemistry Columbia University  New York USA","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5004348015"],"corresponding_institution_ids":["https://openalex.org/I203455613","https://openalex.org/I4210161498"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":16.0397,"has_fulltext":false,"cited_by_count":156,"citation_normalized_percentile":{"value":0.99451789,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"26","issue":"6","first_page":"787","last_page":"799"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4679849147796631},{"id":"https://openalex.org/keywords/area-under-curve","display_name":"Area under curve","score":0.4627860188484192},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43059951066970825},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38310182094573975},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.353792667388916},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14247101545333862},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13925939798355103},{"id":"https://openalex.org/keywords/veterinary-medicine","display_name":"Veterinary medicine","score":0.12812849879264832},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12171301245689392}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4679849147796631},{"id":"https://openalex.org/C3020225094","wikidata":"https://www.wikidata.org/wiki/Q80091","display_name":"Area under curve","level":3,"score":0.4627860188484192},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43059951066970825},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38310182094573975},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.353792667388916},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14247101545333862},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13925939798355103},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.12812849879264832},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12171301245689392},{"id":"https://openalex.org/C112705442","wikidata":"https://www.wikidata.org/wiki/Q323936","display_name":"Pharmacokinetics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-012-9575-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-012-9575-9","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:22576241","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22576241","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Clean water and sanitation","id":"https://metadata.un.org/sdg/6"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314605","display_name":"Astex Pharmaceuticals","ror":"https://ror.org/05fx1fs38"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1971328529","https://openalex.org/W1971652848","https://openalex.org/W1975691556","https://openalex.org/W1982440179","https://openalex.org/W1983194490","https://openalex.org/W1985588649","https://openalex.org/W1991483463","https://openalex.org/W2009423060","https://openalex.org/W2012500759","https://openalex.org/W2046274153","https://openalex.org/W2066707897","https://openalex.org/W2071579644","https://openalex.org/W2072802103","https://openalex.org/W2081719547","https://openalex.org/W2086190523","https://openalex.org/W2088267861","https://openalex.org/W2102377211","https://openalex.org/W2115339329","https://openalex.org/W2118471957","https://openalex.org/W2127760066","https://openalex.org/W2130479394","https://openalex.org/W2177508090"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W2142036596","https://openalex.org/W2072657027"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
