{"id":"https://openalex.org/W1996093204","doi":"https://doi.org/10.1007/s10822-012-9548-z","title":"Stability and free energy calculation of LNA modified quadruplex: a molecular dynamics study","display_name":"Stability and free energy calculation of LNA modified quadruplex: a molecular dynamics study","publication_year":2012,"publication_date":"2012-03-01","ids":{"openalex":"https://openalex.org/W1996093204","doi":"https://doi.org/10.1007/s10822-012-9548-z","mag":"1996093204","pmid":"https://pubmed.ncbi.nlm.nih.gov/22456858"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-012-9548-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-012-9548-z","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055891523","display_name":"Amit Kumar Chaubey","orcid":null},"institutions":[{"id":"https://openalex.org/I886702836","display_name":"Deen Dayal Upadhyaya Gorakhpur University","ror":"https://ror.org/004wf8x96","country_code":"IN","type":"education","lineage":["https://openalex.org/I886702836"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Amit Kumar Chaubey","raw_affiliation_strings":["Biophysics Unit, Department of Physics, DDU Gorakhpur University, Gorakhpur 273009, Uttar Pradesh, India","DDU Gorakhpur university"],"affiliations":[{"raw_affiliation_string":"Biophysics Unit, Department of Physics, DDU Gorakhpur University, Gorakhpur 273009, Uttar Pradesh, India","institution_ids":[]},{"raw_affiliation_string":"DDU Gorakhpur university","institution_ids":["https://openalex.org/I886702836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008398215","display_name":"Kshatresh Dutta Dubey","orcid":"https://orcid.org/0000-0001-8865-7602"},"institutions":[{"id":"https://openalex.org/I886702836","display_name":"Deen Dayal Upadhyaya Gorakhpur University","ror":"https://ror.org/004wf8x96","country_code":"IN","type":"education","lineage":["https://openalex.org/I886702836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Kshatresh Dutta Dubey","raw_affiliation_strings":["Biophysics Unit, Department of Physics, DDU Gorakhpur University, Gorakhpur, 273009, Uttar Pradesh, India","DDU Gorakhpur university"],"affiliations":[{"raw_affiliation_string":"Biophysics Unit, Department of Physics, DDU Gorakhpur University, Gorakhpur, 273009, Uttar Pradesh, India","institution_ids":["https://openalex.org/I886702836"]},{"raw_affiliation_string":"DDU Gorakhpur university","institution_ids":["https://openalex.org/I886702836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111754212","display_name":"Rajendra Prasad Ojha","orcid":null},"institutions":[{"id":"https://openalex.org/I886702836","display_name":"Deen Dayal Upadhyaya Gorakhpur University","ror":"https://ror.org/004wf8x96","country_code":"IN","type":"education","lineage":["https://openalex.org/I886702836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rajendra Prasad Ojha","raw_affiliation_strings":["Biophysics Unit, Department of Physics, DDU Gorakhpur University, Gorakhpur, 273009, Uttar Pradesh, India","DDU Gorakhpur university"],"affiliations":[{"raw_affiliation_string":"Biophysics Unit, Department of Physics, DDU Gorakhpur University, Gorakhpur, 273009, Uttar Pradesh, India","institution_ids":["https://openalex.org/I886702836"]},{"raw_affiliation_string":"DDU Gorakhpur university","institution_ids":["https://openalex.org/I886702836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5055891523"],"corresponding_institution_ids":["https://openalex.org/I886702836"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.8043,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.70475665,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"26","issue":"3","first_page":"289","last_page":"299"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.7457077503204346},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.5628741979598999},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.5438554286956787},{"id":"https://openalex.org/keywords/g-quadruplex","display_name":"G-quadruplex","score":0.5395973920822144},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.43477320671081543},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.4129894971847534},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3662746846675873},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.3058623671531677},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2857523560523987},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2523435652256012},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.10981228947639465},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.08708718419075012},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.07088235020637512}],"concepts":[{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.7457077503204346},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.5628741979598999},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.5438554286956787},{"id":"https://openalex.org/C83762044","wikidata":"https://www.wikidata.org/wiki/Q411641","display_name":"G-quadruplex","level":3,"score":0.5395973920822144},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.43477320671081543},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.4129894971847534},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3662746846675873},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.3058623671531677},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2857523560523987},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2523435652256012},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.10981228947639465},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.08708718419075012},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.07088235020637512},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054856","descriptor_name":"G-Quadruplexes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-012-9548-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-012-9548-z","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:22456858","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22456858","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8299999833106995,"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1594652218","https://openalex.org/W1845396393","https://openalex.org/W1848841113","https://openalex.org/W1974568730","https://openalex.org/W1976417269","https://openalex.org/W1978451195","https://openalex.org/W1978830897","https://openalex.org/W1983338915","https://openalex.org/W1986648841","https://openalex.org/W1994773941","https://openalex.org/W1995943720","https://openalex.org/W2000971601","https://openalex.org/W2000977546","https://openalex.org/W2004228411","https://openalex.org/W2004976345","https://openalex.org/W2007812774","https://openalex.org/W2007880166","https://openalex.org/W2008120871","https://openalex.org/W2010595848","https://openalex.org/W2028498464","https://openalex.org/W2034269086","https://openalex.org/W2038532826","https://openalex.org/W2039740672","https://openalex.org/W2045185912","https://openalex.org/W2046320299","https://openalex.org/W2048069455","https://openalex.org/W2061244509","https://openalex.org/W2062724831","https://openalex.org/W2066029556","https://openalex.org/W2067703548","https://openalex.org/W2067884823","https://openalex.org/W2069123478","https://openalex.org/W2080110153","https://openalex.org/W2080495341","https://openalex.org/W2081327669","https://openalex.org/W2082998873","https://openalex.org/W2090095862","https://openalex.org/W2094087249","https://openalex.org/W2106140689","https://openalex.org/W2108482850","https://openalex.org/W2115127516","https://openalex.org/W2118233996","https://openalex.org/W2122199548","https://openalex.org/W2123525790","https://openalex.org/W2132629607","https://openalex.org/W2133038385","https://openalex.org/W2138668121","https://openalex.org/W2142036695","https://openalex.org/W2157281740","https://openalex.org/W2161650693","https://openalex.org/W2164191257","https://openalex.org/W2165153689","https://openalex.org/W2169125059","https://openalex.org/W2169256371","https://openalex.org/W2171393588","https://openalex.org/W2172060739","https://openalex.org/W4252932062","https://openalex.org/W4297575947"],"related_works":["https://openalex.org/W2766452385","https://openalex.org/W2320293038","https://openalex.org/W2013091743","https://openalex.org/W2041730421","https://openalex.org/W2097720325","https://openalex.org/W2023867690","https://openalex.org/W2150354052","https://openalex.org/W2079977001","https://openalex.org/W1773535258","https://openalex.org/W2041454118"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
