{"id":"https://openalex.org/W2032617417","doi":"https://doi.org/10.1007/s10822-011-9539-5","title":"Are predefined decoy sets of ligand poses able to quantify scoring function accuracy?","display_name":"Are predefined decoy sets of ligand poses able to quantify scoring function accuracy?","publication_year":2012,"publication_date":"2012-01-09","ids":{"openalex":"https://openalex.org/W2032617417","doi":"https://doi.org/10.1007/s10822-011-9539-5","mag":"2032617417","pmid":"https://pubmed.ncbi.nlm.nih.gov/22231069"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-011-9539-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-011-9539-5","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001513198","display_name":"Oliver Korb","orcid":"https://orcid.org/0000-0002-4090-8393"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]},{"id":"https://openalex.org/I4210098980","display_name":"Cambridge Crystallographic Data Centre","ror":"https://ror.org/00zbfm828","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210098980"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Oliver Korb","raw_affiliation_strings":["Department of Chemistry and Zukunftskolleg, University of Konstanz, Konstanz, Germany","The Cambridge Crystallographic Data Centre","University of Konstanz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Zukunftskolleg, University of Konstanz, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"The Cambridge Crystallographic Data Centre","institution_ids":["https://openalex.org/I4210098980"]},{"raw_affiliation_string":"University of Konstanz","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068632016","display_name":"Tim ten Brink","orcid":"https://orcid.org/0009-0006-9411-777X"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim ten Brink","raw_affiliation_strings":["Department of Chemistry and Zukunftskolleg, University of Konstanz, 78457, Konstanz, Germany","University of Konstanz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Zukunftskolleg, University of Konstanz, 78457, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"University of Konstanz","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073563693","display_name":"Fredrick Robin Devadoss Victor Paul Raj","orcid":null},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fredrick Robin Devadoss Victor Paul Raj","raw_affiliation_strings":["Department of Chemistry and Zukunftskolleg, University of Konstanz, 78457, Konstanz, Germany","University of Konstanz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Zukunftskolleg, University of Konstanz, 78457, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"University of Konstanz","institution_ids":["https://openalex.org/I189712700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113690351","display_name":"Matthias Keil","orcid":null},"institutions":[{"id":"https://openalex.org/I4210143490","display_name":"Computing Center","ror":"https://ror.org/0557kgc34","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210143490","https://openalex.org/I4210148470"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Matthias Keil","raw_affiliation_strings":["Chemical Computing Group Inc., 1010 Sherbrooke Street West, Suite 910, Montreal, QC, H3A 2R7, Canada","Chemical Computing Group, Inc"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chemical Computing Group Inc., 1010 Sherbrooke Street West, Suite 910, Montreal, QC, H3A 2R7, Canada","institution_ids":[]},{"raw_affiliation_string":"Chemical Computing Group, Inc","institution_ids":["https://openalex.org/I4210143490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018032298","display_name":"Thomas E. Exner","orcid":"https://orcid.org/0000-0002-1849-5246"},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Thomas E. Exner","raw_affiliation_strings":["Department of Chemistry and Zukunftskolleg, University of Konstanz, 78457, Konstanz, Germany","University of Konstanz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Zukunftskolleg, University of Konstanz, 78457, Konstanz, Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"University of Konstanz","institution_ids":["https://openalex.org/I189712700"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018032298"],"corresponding_institution_ids":["https://openalex.org/I189712700"],"apc_list":{"value":4190,"currency":"USD","value_usd":4190},"apc_paid":null,"fwci":2.2705,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.88264769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"2","first_page":"185","last_page":"197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11235","display_name":"Statistical Methods in Clinical Trials","score":0.9016000032424927,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.9496912360191345},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6767728328704834},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4822297990322113},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.47086894512176514},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4557598829269409},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4553743302822113},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.44321441650390625},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4423501789569855},{"id":"https://openalex.org/keywords/piecewise-linear-function","display_name":"Piecewise linear function","score":0.4419686496257782},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21488875150680542},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.21080169081687927},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1769665777683258},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08143153786659241},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07456019520759583}],"concepts":[{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.9496912360191345},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6767728328704834},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4822297990322113},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47086894512176514},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4557598829269409},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4553743302822113},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.44321441650390625},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4423501789569855},{"id":"https://openalex.org/C17095337","wikidata":"https://www.wikidata.org/wiki/Q2375229","display_name":"Piecewise linear function","level":2,"score":0.4419686496257782},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21488875150680542},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.21080169081687927},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1769665777683258},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08143153786659241},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07456019520759583},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-011-9539-5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-011-9539-5","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:22231069","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22231069","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6100000143051147,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320326505","display_name":"Universit\u00e4t Konstanz","ror":"https://ror.org/0546hnb39"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W124796058","https://openalex.org/W166331879","https://openalex.org/W1516514628","https://openalex.org/W1835740130","https://openalex.org/W1973191530","https://openalex.org/W1977467384","https://openalex.org/W1979966120","https://openalex.org/W1980949045","https://openalex.org/W1981608946","https://openalex.org/W1983143653","https://openalex.org/W1983194490","https://openalex.org/W1986240377","https://openalex.org/W1988437166","https://openalex.org/W1993311612","https://openalex.org/W1993403967","https://openalex.org/W2000825058","https://openalex.org/W2003092222","https://openalex.org/W2004198131","https://openalex.org/W2008005113","https://openalex.org/W2013090273","https://openalex.org/W2014550996","https://openalex.org/W2020040806","https://openalex.org/W2033856912","https://openalex.org/W2036927874","https://openalex.org/W2038542598","https://openalex.org/W2042129725","https://openalex.org/W2046544104","https://openalex.org/W2048586347","https://openalex.org/W2049417369","https://openalex.org/W2050456292","https://openalex.org/W2051292744","https://openalex.org/W2052030759","https://openalex.org/W2058713395","https://openalex.org/W2059450818","https://openalex.org/W2063535987","https://openalex.org/W2064572456","https://openalex.org/W2067455153","https://openalex.org/W2071717945","https://openalex.org/W2073208043","https://openalex.org/W2074218294","https://openalex.org/W2085564033","https://openalex.org/W2090035064","https://openalex.org/W2091111431","https://openalex.org/W2091429460","https://openalex.org/W2092501219","https://openalex.org/W2093426296","https://openalex.org/W2097980962","https://openalex.org/W2101751216","https://openalex.org/W2106466007","https://openalex.org/W2107506448","https://openalex.org/W2118512515","https://openalex.org/W2121895929","https://openalex.org/W2127760066","https://openalex.org/W2129111190","https://openalex.org/W2133154726","https://openalex.org/W2133688758","https://openalex.org/W2133773344","https://openalex.org/W2138473864","https://openalex.org/W2140970661","https://openalex.org/W2158360182","https://openalex.org/W2161239029","https://openalex.org/W2171074980","https://openalex.org/W2410565082"],"related_works":["https://openalex.org/W2088388996","https://openalex.org/W2124981562","https://openalex.org/W2187341605","https://openalex.org/W2114320488","https://openalex.org/W3005094479","https://openalex.org/W1973364873","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2027065525","https://openalex.org/W2057846043"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2016-06-24T00:00:00"}
