{"id":"https://openalex.org/W2061097764","doi":"https://doi.org/10.1007/s10822-011-9506-1","title":"Molecular simulation methods in drug discovery: a prospective outlook","display_name":"Molecular simulation methods in drug discovery: a prospective outlook","publication_year":2011,"publication_date":"2011-12-07","ids":{"openalex":"https://openalex.org/W2061097764","doi":"https://doi.org/10.1007/s10822-011-9506-1","mag":"2061097764","pmid":"https://pubmed.ncbi.nlm.nih.gov/22160626"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-011-9506-1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-011-9506-1","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037789245","display_name":"Xavier Barril","orcid":"https://orcid.org/0000-0002-0281-1347"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Xavier Barril","raw_affiliation_strings":["Departament de Fisicoqu\u00edmica and Institut de Biomedicina (IBUB), Facultat de Farm\u00e0cia, Universitat de Barcelona, Barcelona, Spain. xbarril@ub.edu","Departament de Fisicoqu\u00edmica and Institut de Biomedicina (IBUB), Facultat de Farm\u00e0cia, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Fisicoqu\u00edmica and Institut de Biomedicina (IBUB), Facultat de Farm\u00e0cia, Universitat de Barcelona, Barcelona, Spain. xbarril@ub.edu","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Departament de Fisicoqu\u00edmica and Institut de Biomedicina (IBUB), Facultat de Farm\u00e0cia, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058817123","display_name":"F. Javier Luque","orcid":"https://orcid.org/0000-0002-8049-3567"},"institutions":[{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Javier Luque","raw_affiliation_strings":["Departament de Fisicoqu\u00edmica and Institut de Biomedicina (IBUB), Facultat de Farm\u00e0cia, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Fisicoqu\u00edmica and Institut de Biomedicina (IBUB), Facultat de Farm\u00e0cia, Universitat de Barcelona, Av. Diagonal 643, 08028, Barcelona, Spain","institution_ids":["https://openalex.org/I71999127"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":1.9568,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.85852373,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"26","issue":"1","first_page":"81","last_page":"86"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/druggability","display_name":"Druggability","score":0.9291983842849731},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.7277674674987793},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.7204752564430237},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6314671039581299},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6236968040466309},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.5779143571853638},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46518534421920776},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.45729267597198486},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3953368365764618},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.3443390429019928},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3249548673629761},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1898190677165985},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.167069673538208},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.16292020678520203},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13970524072647095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1377972960472107},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10805568099021912}],"concepts":[{"id":"https://openalex.org/C10679952","wikidata":"https://www.wikidata.org/wiki/Q5308937","display_name":"Druggability","level":3,"score":0.9291983842849731},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.7277674674987793},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.7204752564430237},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6314671039581299},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6236968040466309},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.5779143571853638},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46518534421920776},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.45729267597198486},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3953368365764618},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3443390429019928},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3249548673629761},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1898190677165985},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.167069673538208},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.16292020678520203},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13970524072647095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1377972960472107},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10805568099021912},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-011-9506-1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-011-9506-1","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:22160626","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22160626","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W106859849","https://openalex.org/W185137928","https://openalex.org/W1967348240","https://openalex.org/W1968682237","https://openalex.org/W1969388555","https://openalex.org/W1970306476","https://openalex.org/W1971540996","https://openalex.org/W1973644758","https://openalex.org/W1974649747","https://openalex.org/W1977534481","https://openalex.org/W1977909079","https://openalex.org/W1979598348","https://openalex.org/W1979985158","https://openalex.org/W1980337077","https://openalex.org/W1984157110","https://openalex.org/W1988076192","https://openalex.org/W1988562891","https://openalex.org/W1992856935","https://openalex.org/W1992899488","https://openalex.org/W2004676220","https://openalex.org/W2011105372","https://openalex.org/W2011138994","https://openalex.org/W2013807069","https://openalex.org/W2018408116","https://openalex.org/W2018919352","https://openalex.org/W2019971393","https://openalex.org/W2023363753","https://openalex.org/W2025006523","https://openalex.org/W2029112828","https://openalex.org/W2029130189","https://openalex.org/W2030609780","https://openalex.org/W2032817710","https://openalex.org/W2037625954","https://openalex.org/W2039786868","https://openalex.org/W2043429268","https://openalex.org/W2044703506","https://openalex.org/W2050273205","https://openalex.org/W2054027614","https://openalex.org/W2063060349","https://openalex.org/W2063061240","https://openalex.org/W2064045850","https://openalex.org/W2064321539","https://openalex.org/W2067484324","https://openalex.org/W2069982778","https://openalex.org/W2071857296","https://openalex.org/W2074974429","https://openalex.org/W2075093176","https://openalex.org/W2078142106","https://openalex.org/W2082688044","https://openalex.org/W2083664226","https://openalex.org/W2091858804","https://openalex.org/W2092192536","https://openalex.org/W2096929343","https://openalex.org/W2098376669","https://openalex.org/W2099654238","https://openalex.org/W2107655634","https://openalex.org/W2111796195","https://openalex.org/W2120898782","https://openalex.org/W2121895929","https://openalex.org/W2142694980","https://openalex.org/W2142820798","https://openalex.org/W2146942655","https://openalex.org/W2147491346","https://openalex.org/W2149302140","https://openalex.org/W2151635514","https://openalex.org/W2154314990","https://openalex.org/W2155417823","https://openalex.org/W2159497832","https://openalex.org/W2161117545","https://openalex.org/W2201103592","https://openalex.org/W2312634253","https://openalex.org/W2321812084","https://openalex.org/W2333083696","https://openalex.org/W3099374791","https://openalex.org/W4246818439","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2556855892","https://openalex.org/W4214810602","https://openalex.org/W1969888071","https://openalex.org/W2035422779","https://openalex.org/W4389227606","https://openalex.org/W2925167008","https://openalex.org/W2036884070","https://openalex.org/W2008033400","https://openalex.org/W3023385275","https://openalex.org/W1972982874"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
