{"id":"https://openalex.org/W2105372393","doi":"https://doi.org/10.1007/s10822-011-9465-6","title":"VSDMIP 1.5: an automated structure- and ligand-based virtual screening platform with a PyMOL graphical user interface","display_name":"VSDMIP 1.5: an automated structure- and ligand-based virtual screening platform with a PyMOL graphical user interface","publication_year":2011,"publication_date":"2011-08-08","ids":{"openalex":"https://openalex.org/W2105372393","doi":"https://doi.org/10.1007/s10822-011-9465-6","mag":"2105372393","pmid":"https://pubmed.ncbi.nlm.nih.gov/21826555"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-011-9465-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-011-9465-6","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056460983","display_name":"\u00c1lvaro Cort\u00e9s-Cabrera","orcid":"https://orcid.org/0000-0003-4635-6267"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I189268942","display_name":"Universidad de Alcal\u00e1","ror":"https://ror.org/04pmn0e78","country_code":"ES","type":"education","lineage":["https://openalex.org/I189268942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00c1lvaro Cort\u00e9s Cabrera","raw_affiliation_strings":["Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, 28871 Alcal\u00e1 de Henares, Madrid, Spain","Universidad de Alcal\u00e1","Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC/UAM)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, 28871 Alcal\u00e1 de Henares, Madrid, Spain","institution_ids":["https://openalex.org/I189268942"]},{"raw_affiliation_string":"Universidad de Alcal\u00e1","institution_ids":["https://openalex.org/I189268942"]},{"raw_affiliation_string":"Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC/UAM)","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055887437","display_name":"Rub\u00e9n Gil\u2010Redondo","orcid":"https://orcid.org/0000-0002-3541-9085"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rub\u00e9n Gil-Redondo","raw_affiliation_strings":["Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, 28049, Madrid, Spain","Centro de Biolog\u00eda Molecular \u201cSevero Ochoa\u201d, CSIC /UAM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, 28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Centro de Biolog\u00eda Molecular \u201cSevero Ochoa\u201d, CSIC /UAM","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056706298","display_name":"Almudena Perona","orcid":"https://orcid.org/0000-0002-2402-4926"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Almudena Perona","raw_affiliation_strings":["Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, 28049, Madrid, Spain","Centro de Biolog\u00eda Molecular \u201cSevero Ochoa\u201d, CSIC /UAM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, 28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Centro de Biolog\u00eda Molecular \u201cSevero Ochoa\u201d, CSIC /UAM","institution_ids":["https://openalex.org/I134820265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048905988","display_name":"Federico Gago","orcid":"https://orcid.org/0000-0002-3071-4878"},"institutions":[{"id":"https://openalex.org/I189268942","display_name":"Universidad de Alcal\u00e1","ror":"https://ror.org/04pmn0e78","country_code":"ES","type":"education","lineage":["https://openalex.org/I189268942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Federico Gago","raw_affiliation_strings":["Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, 28871, Alcal\u00e1 de Henares, Madrid, Spain","Universidad de Alcal\u00e0,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Farmacolog\u00eda, Universidad de Alcal\u00e1, 28871, Alcal\u00e1 de Henares, Madrid, Spain","institution_ids":["https://openalex.org/I189268942"]},{"raw_affiliation_string":"Universidad de Alcal\u00e0,","institution_ids":["https://openalex.org/I189268942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023692978","display_name":"Antonio Morreale","orcid":"https://orcid.org/0000-0003-4236-0883"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210146061","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210146061"]},{"id":"https://openalex.org/I63634437","display_name":"Universidad Aut\u00f3noma de Madrid","ror":"https://ror.org/01cby8j38","country_code":"ES","type":"education","lineage":["https://openalex.org/I63634437"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Morreale","raw_affiliation_strings":["Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, 28049, Madrid, Spain","Centro de Biolog\u00eda Molecular \u201cSevero Ochoa\u201d, CSIC /UAM"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unidad de Bioinform\u00e1tica, Centro de Biolog\u00eda Molecular Severo Ochoa (CSIC-UAM), Campus UAM, c/Nicol\u00e1s Cabrera 1, 28049, Madrid, Spain","institution_ids":["https://openalex.org/I4210146061","https://openalex.org/I63634437"]},{"raw_affiliation_string":"Centro de Biolog\u00eda Molecular \u201cSevero Ochoa\u201d, CSIC /UAM","institution_ids":["https://openalex.org/I134820265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":3.2614,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.92113357,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"9","first_page":"813","last_page":"824"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.726456880569458},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6916149258613586},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.6388729214668274},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5417144894599915},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5175678133964539},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5006103515625},{"id":"https://openalex.org/keywords/directory","display_name":"Directory","score":0.4796203076839447},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.45594653487205505},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3074571192264557},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2287873923778534},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15287485718727112},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08040410280227661}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.726456880569458},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6916149258613586},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.6388729214668274},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5417144894599915},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5175678133964539},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5006103515625},{"id":"https://openalex.org/C2777683733","wikidata":"https://www.wikidata.org/wiki/Q201456","display_name":"Directory","level":2,"score":0.4796203076839447},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.45594653487205505},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3074571192264557},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2287873923778534},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15287485718727112},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08040410280227661},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-011-9465-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-011-9465-6","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:21826555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21826555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320317510","display_name":"Centro de Biolog\u00eda Molecular Severo Ochoa","ror":"https://ror.org/03v9e8t09"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1526056362","https://openalex.org/W1540442759","https://openalex.org/W1835740130","https://openalex.org/W1971459249","https://openalex.org/W1975147762","https://openalex.org/W1976499671","https://openalex.org/W1977899779","https://openalex.org/W1978880915","https://openalex.org/W1984571117","https://openalex.org/W1990433277","https://openalex.org/W1992740665","https://openalex.org/W2011805684","https://openalex.org/W2013090273","https://openalex.org/W2014276094","https://openalex.org/W2031372687","https://openalex.org/W2032159017","https://openalex.org/W2038361288","https://openalex.org/W2040261924","https://openalex.org/W2047399603","https://openalex.org/W2049961577","https://openalex.org/W2050273205","https://openalex.org/W2055424455","https://openalex.org/W2069247261","https://openalex.org/W2069944571","https://openalex.org/W2081266727","https://openalex.org/W2086779432","https://openalex.org/W2093426296","https://openalex.org/W2094986280","https://openalex.org/W2116903488","https://openalex.org/W2118233996","https://openalex.org/W2124074156","https://openalex.org/W2127760066","https://openalex.org/W2135274037","https://openalex.org/W2143696490","https://openalex.org/W2144879169","https://openalex.org/W2146390839","https://openalex.org/W2152233061","https://openalex.org/W2152997175","https://openalex.org/W2155741020","https://openalex.org/W2160037672","https://openalex.org/W2160310346","https://openalex.org/W2208175234","https://openalex.org/W2330764340","https://openalex.org/W3021510377"],"related_works":["https://openalex.org/W3115906952","https://openalex.org/W3134811395","https://openalex.org/W3155196058","https://openalex.org/W1529821365","https://openalex.org/W4287378204","https://openalex.org/W2135486207","https://openalex.org/W1499611046","https://openalex.org/W3024420453","https://openalex.org/W2388608119","https://openalex.org/W2915494741"],"abstract_inverted_index":null,"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
