{"id":"https://openalex.org/W2015907087","doi":"https://doi.org/10.1007/s10822-008-9170-2","title":"What do we know and when do we know it?","display_name":"What do we know and when do we know it?","publication_year":2008,"publication_date":"2008-02-05","ids":{"openalex":"https://openalex.org/W2015907087","doi":"https://doi.org/10.1007/s10822-008-9170-2","mag":"2015907087","pmid":"https://pubmed.ncbi.nlm.nih.gov/18253702"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-008-9170-2","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-008-9170-2","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-008-9170-2.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10822-008-9170-2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102879646","display_name":"Anthony Nicholls","orcid":"https://orcid.org/0000-0001-8488-9641"},"institutions":[{"id":"https://openalex.org/I4210129888","display_name":"Almaz-Antey (Russia)","ror":"https://ror.org/03b0cj417","country_code":"RU","type":"company","lineage":["https://openalex.org/I4210129888"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Anthony Nicholls","raw_affiliation_strings":["OpenEye Scientific Software, Inc, 9D Bisbee Crt, Santa Fe, NM 87508, USA. anthony@eyesopen.com","OPENEYE SCIENTIFIC SOFTWARE INC"],"affiliations":[{"raw_affiliation_string":"OpenEye Scientific Software, Inc, 9D Bisbee Crt, Santa Fe, NM 87508, USA. anthony@eyesopen.com","institution_ids":["https://openalex.org/I4210129888"]},{"raw_affiliation_string":"OPENEYE SCIENTIFIC SOFTWARE INC","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5102879646"],"corresponding_institution_ids":["https://openalex.org/I4210129888"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":{"value":2890,"currency":"EUR","value_usd":3690},"fwci":40.1515,"has_fulltext":true,"cited_by_count":210,"citation_normalized_percentile":{"value":0.99814446,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"22","issue":"3-4","first_page":"239","last_page":"255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9300000071525574,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9300000071525574,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9126999974250793,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9089999794960022,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.726766049861908},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7160893082618713},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5703803896903992},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3549456000328064}],"concepts":[{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.726766049861908},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7160893082618713},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5703803896903992},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3549456000328064},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10822-008-9170-2","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-008-9170-2","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-008-9170-2.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:18253702","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18253702","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2270923","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2270923","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Comput Aided Mol Des","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10822-008-9170-2","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10822-008-9170-2","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10822-008-9170-2.pdf","source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2015907087.pdf","grobid_xml":"https://content.openalex.org/works/W2015907087.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1539462193","https://openalex.org/W1966851745","https://openalex.org/W1968114652","https://openalex.org/W2003752196","https://openalex.org/W2006331688","https://openalex.org/W2027065525","https://openalex.org/W2038617772","https://openalex.org/W2040496005","https://openalex.org/W2042110087","https://openalex.org/W2054881132","https://openalex.org/W2081814119","https://openalex.org/W2102150307","https://openalex.org/W2112670427","https://openalex.org/W2121895929","https://openalex.org/W2125792789","https://openalex.org/W2127760066","https://openalex.org/W2135732933","https://openalex.org/W2141946969","https://openalex.org/W2157825442","https://openalex.org/W2208175234","https://openalex.org/W2328176404","https://openalex.org/W4388317518"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"Two":[0],"essential":[1],"aspects":[2],"of":[3,16,30,46,62,96,132],"virtual":[4,19],"screening":[5],"are":[6,66,146],"considered:":[7],"experimental":[8],"design":[9,15],"and":[10],"performance":[11,91],"metrics.":[12],"In":[13,80],"the":[14,28,31,34,40,67,71,94,119],"any":[17],"retrospective":[18],"screen,":[20],"choices":[21],"have":[22],"to":[23,27,36,87,99,126,128,136,139],"be":[24,75,85,153],"made":[25],"as":[26,103],"purpose":[29],"exercise.":[32],"Is":[33,39],"goal":[35],"compare":[37],"methods?":[38],"interest":[41],"in":[42,77],"a":[43,54,63,78,123,140],"particular":[44],"type":[45],"target":[47],"or":[48,57,107,138],"all":[49],"targets?":[50],"Are":[51],"we":[52],"simulating":[53],"'real-world'":[55],"setting,":[56],"teasing":[58],"out":[59],"distinguishing":[60],"features":[61],"method?":[64],"What":[65,73],"confidence":[68],"limits":[69],"for":[70],"results?":[72],"should":[74,84],"reported":[76],"publication?":[79],"particular,":[81],"what":[82],"criteria":[83],"used":[86],"decide":[88],"between":[89],"different":[90],"metrics?":[92],"Comparing":[93],"field":[95,121],"molecular":[97],"modeling":[98,120],"other":[100],"endeavors,":[101],"such":[102],"medical":[104],"statistics,":[105],"criminology,":[106],"computer":[108],"hardware":[109],"evaluation":[110],"indicates":[111],"some":[112],"clear":[113],"directions.":[114],"Taken":[115],"together":[116],"these":[117],"suggest":[118],"has":[122],"long":[124],"way":[125],"go":[127],"provide":[129],"effective":[130],"assessment":[131],"its":[133],"approaches,":[134],"either":[135],"itself":[137],"broader":[141],"audience,":[142],"but":[143],"that":[144],"there":[145],"no":[147],"technical":[148],"reasons":[149],"why":[150],"progress":[151],"cannot":[152],"made.":[154]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":20},{"year":2012,"cited_by_count":14}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
