{"id":"https://openalex.org/W2015080758","doi":"https://doi.org/10.1007/s10822-007-9163-6","title":"Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection\u2014What can we learn from earlier mistakes?","display_name":"Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection\u2014What can we learn from earlier mistakes?","publication_year":2008,"publication_date":"2008-01-14","ids":{"openalex":"https://openalex.org/W2015080758","doi":"https://doi.org/10.1007/s10822-007-9163-6","mag":"2015080758","pmid":"https://pubmed.ncbi.nlm.nih.gov/18196462"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-007-9163-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-007-9163-6","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065353728","display_name":"Johannes Kirchmair","orcid":"https://orcid.org/0000-0003-2667-5877"},"institutions":[{"id":"https://openalex.org/I4210137046","display_name":"Inte:Ligand (Austria)","ror":"https://ror.org/03k462x97","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210137046"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Johannes Kirchmair","raw_affiliation_strings":["Inte:Ligand Software-Entwicklungs- und Consulting GmbH, Clemens Maria Hofbauer-Gasse 6, 2344, Maria Enzersdorf, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inte:Ligand Software-Entwicklungs- und Consulting GmbH, Clemens Maria Hofbauer-Gasse 6, 2344, Maria Enzersdorf, Austria","institution_ids":["https://openalex.org/I4210137046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032478852","display_name":"Patrick Markt","orcid":null},"institutions":[{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Patrick Markt","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, Institute of Pharmacy and Center for Molecular Biosciences (CMBI), University of Innsbruck, Innrain 52, 6020, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, Institute of Pharmacy and Center for Molecular Biosciences (CMBI), University of Innsbruck, Innrain 52, 6020, Innsbruck, Austria","institution_ids":["https://openalex.org/I190249584"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002260688","display_name":"Simona Distinto","orcid":"https://orcid.org/0000-0003-1620-6225"},"institutions":[{"id":"https://openalex.org/I172446870","display_name":"University of Cagliari","ror":"https://ror.org/003109y17","country_code":"IT","type":"education","lineage":["https://openalex.org/I172446870"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simona Distinto","raw_affiliation_strings":["Dipartimento Farmaco Chimico Tecnologico, Universita` degli Studi di Cagliari, 09124, Cagliari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento Farmaco Chimico Tecnologico, Universita` degli Studi di Cagliari, 09124, Cagliari, Italy","institution_ids":["https://openalex.org/I172446870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078916398","display_name":"Gerhard Wolber","orcid":"https://orcid.org/0000-0002-5344-0048"},"institutions":[{"id":"https://openalex.org/I4210137046","display_name":"Inte:Ligand (Austria)","ror":"https://ror.org/03k462x97","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210137046"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gerhard Wolber","raw_affiliation_strings":["Inte:Ligand Software-Entwicklungs- und Consulting GmbH, Clemens Maria Hofbauer-Gasse 6, 2344, Maria Enzersdorf, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inte:Ligand Software-Entwicklungs- und Consulting GmbH, Clemens Maria Hofbauer-Gasse 6, 2344, Maria Enzersdorf, Austria","institution_ids":["https://openalex.org/I4210137046"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022361290","display_name":"Thierry Langer","orcid":"https://orcid.org/0000-0002-5242-1240"},"institutions":[{"id":"https://openalex.org/I4210137046","display_name":"Inte:Ligand (Austria)","ror":"https://ror.org/03k462x97","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210137046"]},{"id":"https://openalex.org/I190249584","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659","country_code":"AT","type":"education","lineage":["https://openalex.org/I190249584"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Thierry Langer","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, Institute of Pharmacy and Center for Molecular Biosciences (CMBI), University of Innsbruck, Innrain 52, 6020, Innsbruck, Austria","Inte:Ligand Software-Entwicklungs- und Consulting GmbH, Clemens Maria Hofbauer-Gasse 6, 2344, Maria Enzersdorf, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, Institute of Pharmacy and Center for Molecular Biosciences (CMBI), University of Innsbruck, Innrain 52, 6020, Innsbruck, Austria","institution_ids":["https://openalex.org/I190249584"]},{"raw_affiliation_string":"Inte:Ligand Software-Entwicklungs- und Consulting GmbH, Clemens Maria Hofbauer-Gasse 6, 2344, Maria Enzersdorf, Austria","institution_ids":["https://openalex.org/I4210137046"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065353728"],"corresponding_institution_ids":["https://openalex.org/I4210137046"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":28.9558,"has_fulltext":false,"cited_by_count":417,"citation_normalized_percentile":{"value":0.99817851,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"22","issue":"3-4","first_page":"213","last_page":"228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.942420244216919},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6751679182052612},{"id":"https://openalex.org/keywords/decoy","display_name":"Decoy","score":0.5673835277557373},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.459606409072876},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.4545847177505493},{"id":"https://openalex.org/keywords/selection-bias","display_name":"Selection bias","score":0.45308318734169006},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4340306520462036},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4144146144390106},{"id":"https://openalex.org/keywords/quality-assessment","display_name":"Quality assessment","score":0.414401650428772},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.399001806974411},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19382479786872864},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.1627865731716156},{"id":"https://openalex.org/keywords/reliability-engineering","display_name":"Reliability engineering","score":0.14868149161338806},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1258714199066162},{"id":"https://openalex.org/keywords/evaluation-methods","display_name":"Evaluation methods","score":0.11782771348953247},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09852293133735657},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08931982517242432}],"concepts":[{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.942420244216919},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6751679182052612},{"id":"https://openalex.org/C2779179475","wikidata":"https://www.wikidata.org/wiki/Q3545649","display_name":"Decoy","level":3,"score":0.5673835277557373},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.459606409072876},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.4545847177505493},{"id":"https://openalex.org/C40423286","wikidata":"https://www.wikidata.org/wiki/Q284172","display_name":"Selection bias","level":2,"score":0.45308318734169006},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4340306520462036},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4144146144390106},{"id":"https://openalex.org/C3020001037","wikidata":"https://www.wikidata.org/wiki/Q836575","display_name":"Quality assessment","level":3,"score":0.414401650428772},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.399001806974411},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19382479786872864},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.1627865731716156},{"id":"https://openalex.org/C200601418","wikidata":"https://www.wikidata.org/wiki/Q2193887","display_name":"Reliability engineering","level":1,"score":0.14868149161338806},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1258714199066162},{"id":"https://openalex.org/C3018395757","wikidata":"https://www.wikidata.org/wiki/Q1379672","display_name":"Evaluation methods","level":2,"score":0.11782771348953247},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09852293133735657},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08931982517242432},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005069","descriptor_name":"Evaluation Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005069","descriptor_name":"Evaluation Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005069","descriptor_name":"Evaluation Studies as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017076","descriptor_name":"Computer-Aided Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10822-007-9163-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-007-9163-6","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:18196462","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18196462","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:iris.unica.it:11584/64085","is_oa":false,"landing_page_url":"http://hdl.handle.net/11584/64085","pdf_url":null,"source":{"id":"https://openalex.org/S4377196293","display_name":"UNICA IRIS Institutional Research Information System (University of Cagliari)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172446870","host_organization_name":"University of Cagliari","host_organization_lineage":["https://openalex.org/I172446870"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":82,"referenced_works":["https://openalex.org/W1540442759","https://openalex.org/W1546015235","https://openalex.org/W1592950931","https://openalex.org/W1596348044","https://openalex.org/W1963723282","https://openalex.org/W1964692086","https://openalex.org/W1965098358","https://openalex.org/W1973191530","https://openalex.org/W1974037865","https://openalex.org/W1974422922","https://openalex.org/W1974809008","https://openalex.org/W1979459637","https://openalex.org/W1980949045","https://openalex.org/W1983304433","https://openalex.org/W1985588649","https://openalex.org/W1985767786","https://openalex.org/W1986568494","https://openalex.org/W2003752196","https://openalex.org/W2007218072","https://openalex.org/W2009423060","https://openalex.org/W2014276094","https://openalex.org/W2015461838","https://openalex.org/W2017132056","https://openalex.org/W2019281458","https://openalex.org/W2030686695","https://openalex.org/W2035292911","https://openalex.org/W2042110087","https://openalex.org/W2042624251","https://openalex.org/W2044115597","https://openalex.org/W2050456292","https://openalex.org/W2050992060","https://openalex.org/W2055100052","https://openalex.org/W2055410316","https://openalex.org/W2061111857","https://openalex.org/W2067492849","https://openalex.org/W2068017935","https://openalex.org/W2068672372","https://openalex.org/W2071717945","https://openalex.org/W2077332797","https://openalex.org/W2077596992","https://openalex.org/W2080245527","https://openalex.org/W2080773062","https://openalex.org/W2096729078","https://openalex.org/W2097420030","https://openalex.org/W2103300124","https://openalex.org/W2103515960","https://openalex.org/W2107506448","https://openalex.org/W2109553965","https://openalex.org/W2111767148","https://openalex.org/W2113852446","https://openalex.org/W2114779636","https://openalex.org/W2117254509","https://openalex.org/W2121895929","https://openalex.org/W2125607240","https://openalex.org/W2125792789","https://openalex.org/W2127760066","https://openalex.org/W2128332459","https://openalex.org/W2129882004","https://openalex.org/W2130216967","https://openalex.org/W2130243725","https://openalex.org/W2130479394","https://openalex.org/W2135472700","https://openalex.org/W2136241053","https://openalex.org/W2138473864","https://openalex.org/W2148824036","https://openalex.org/W2152040212","https://openalex.org/W2154033129","https://openalex.org/W2160114756","https://openalex.org/W2164834306","https://openalex.org/W2166133396","https://openalex.org/W2166739323","https://openalex.org/W2167062204","https://openalex.org/W2176516200","https://openalex.org/W2201106676","https://openalex.org/W2204230050","https://openalex.org/W2208175234","https://openalex.org/W2208203352","https://openalex.org/W2209568211","https://openalex.org/W2210622668","https://openalex.org/W2212804072","https://openalex.org/W2494768458","https://openalex.org/W2949387234"],"related_works":["https://openalex.org/W2088388996","https://openalex.org/W2124981562","https://openalex.org/W2187341605","https://openalex.org/W2114320488","https://openalex.org/W3005094479","https://openalex.org/W1973364873","https://openalex.org/W2773493604","https://openalex.org/W2269591907","https://openalex.org/W2027065525","https://openalex.org/W2336040088"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":33},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":27},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":27},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":23},{"year":2014,"cited_by_count":28},{"year":2013,"cited_by_count":21},{"year":2012,"cited_by_count":32}],"updated_date":"2026-05-04T08:30:34.212998","created_date":"2025-10-10T00:00:00"}
