{"id":"https://openalex.org/W2019693963","doi":"https://doi.org/10.1007/s10822-007-9155-6","title":"Molecular dynamics studies of \u03b1-helix stability in fibril-forming peptides","display_name":"Molecular dynamics studies of \u03b1-helix stability in fibril-forming peptides","publication_year":2007,"publication_date":"2007-12-06","ids":{"openalex":"https://openalex.org/W2019693963","doi":"https://doi.org/10.1007/s10822-007-9155-6","mag":"2019693963","pmid":"https://pubmed.ncbi.nlm.nih.gov/18058241"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-007-9155-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-007-9155-6","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021715811","display_name":"Erik Nordling","orcid":"https://orcid.org/0000-0001-9310-7947"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I4210137624","display_name":"Swedish Orphan Biovitrum (Sweden)","ror":"https://ror.org/04asvbz37","country_code":"SE","type":"company","lineage":["https://openalex.org/I4210137624"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Erik Nordling","raw_affiliation_strings":["Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 171 77, Sweden. erik.nordling@biovitrum.com","Biovitrum AB, Stockholm, Sweden","Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, 171 77, Sweden. erik.nordling@biovitrum.com","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Biovitrum AB, Stockholm, Sweden","institution_ids":["https://openalex.org/I4210137624"]},{"raw_affiliation_string":"Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067776823","display_name":"Yvonne Kallberg","orcid":null},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Yvonne Kallberg","raw_affiliation_strings":["Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, 171 77, Sweden","IFM Bioinformatics, Link\u00f6ping University, Linkoping, 581 83, Sweden","Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, Sweden","IFM Bioinformatics, Link\u00f6ping University, Linkoping, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, 171 77, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"IFM Bioinformatics, Link\u00f6ping University, Linkoping, 581 83, Sweden","institution_ids":["https://openalex.org/I102134673"]},{"raw_affiliation_string":"Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"IFM Bioinformatics, Link\u00f6ping University, Linkoping, Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020365644","display_name":"Jan Johansson","orcid":"https://orcid.org/0000-0002-8719-4703"},"institutions":[{"id":"https://openalex.org/I298625061","display_name":"Swedish University of Agricultural Sciences","ror":"https://ror.org/02yy8x990","country_code":"SE","type":"education","lineage":["https://openalex.org/I298625061"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jan Johansson","raw_affiliation_strings":["Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, The Biomedical Centre,  Uppsala, 751 23, Sweden","Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, The Biomedical Centre,  Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, The Biomedical Centre,  Uppsala, 751 23, Sweden","institution_ids":["https://openalex.org/I298625061"]},{"raw_affiliation_string":"Department of Anatomy, Physiology and Biochemistry, Swedish University of Agricultural Sciences, The Biomedical Centre,  Uppsala, Sweden","institution_ids":["https://openalex.org/I298625061"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052620448","display_name":"Bengt Persson","orcid":"https://orcid.org/0000-0003-3165-5344"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Bengt Persson","raw_affiliation_strings":["Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, 171 77, Sweden","IFM Bioinformatics, Link\u00f6ping University, Linkoping, 581 83, Sweden","Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, Sweden","IFM Bioinformatics, Link\u00f6ping University, Linkoping, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, 171 77, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"IFM Bioinformatics, Link\u00f6ping University, Linkoping, 581 83, Sweden","institution_ids":["https://openalex.org/I102134673"]},{"raw_affiliation_string":"Department of Cell and Molecular Biology,  Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"IFM Bioinformatics, Link\u00f6ping University, Linkoping, Sweden","institution_ids":["https://openalex.org/I102134673"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5021715811"],"corresponding_institution_ids":["https://openalex.org/I28166907","https://openalex.org/I4210137624"],"apc_list":{"value":3690,"currency":"USD","value_usd":3690},"apc_paid":null,"fwci":0.816,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.7136352,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"22","issue":"1","first_page":"53","last_page":"58"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10086","display_name":"Alzheimer's disease research and treatments","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.7345446348190308},{"id":"https://openalex.org/keywords/fibril","display_name":"Fibril","score":0.6242796778678894},{"id":"https://openalex.org/keywords/helix","display_name":"Helix (gastropod)","score":0.5997958183288574},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5734103918075562},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.5127567052841187},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.44312429428100586},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.43723559379577637},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42297637462615967},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.23639535903930664},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1802537441253662},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.07844007015228271}],"concepts":[{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.7345446348190308},{"id":"https://openalex.org/C27523624","wikidata":"https://www.wikidata.org/wiki/Q14860849","display_name":"Fibril","level":2,"score":0.6242796778678894},{"id":"https://openalex.org/C2778530040","wikidata":"https://www.wikidata.org/wiki/Q1937315","display_name":"Helix (gastropod)","level":3,"score":0.5997958183288574},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5734103918075562},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.5127567052841187},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.44312429428100586},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.43723559379577637},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42297637462615967},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.23639535903930664},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1802537441253662},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.07844007015228271},{"id":"https://openalex.org/C2779965526","wikidata":"https://www.wikidata.org/wiki/Q308841","display_name":"Snail","level":2,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019906","descriptor_name":"Nuclear Magnetic Resonance, Biomolecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/s10822-007-9155-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-007-9155-6","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:18058241","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18058241","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","score":0.8700000047683716,"id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320940","display_name":"Stiftelsen f\u00f6r\u00a0Strategisk Forskning","ror":"https://ror.org/044wr7g58"},{"id":"https://openalex.org/F4320322225","display_name":"Link\u00f6pings Universitet","ror":"https://ror.org/05ynxx418"},{"id":"https://openalex.org/F4320322315","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W58149416","https://openalex.org/W1491824558","https://openalex.org/W1518693759","https://openalex.org/W1552345552","https://openalex.org/W1560089066","https://openalex.org/W1595368494","https://openalex.org/W1600652270","https://openalex.org/W1845614411","https://openalex.org/W1967669475","https://openalex.org/W1968280815","https://openalex.org/W1969641027","https://openalex.org/W1973650927","https://openalex.org/W1978314140","https://openalex.org/W2004546493","https://openalex.org/W2008708467","https://openalex.org/W2018769240","https://openalex.org/W2035266068","https://openalex.org/W2042742422","https://openalex.org/W2054881399","https://openalex.org/W2057035225","https://openalex.org/W2057871179","https://openalex.org/W2063272219","https://openalex.org/W2069559773","https://openalex.org/W2075481535","https://openalex.org/W2076453964","https://openalex.org/W2087748229","https://openalex.org/W2093861673","https://openalex.org/W2095782512","https://openalex.org/W2122294662","https://openalex.org/W2123768693","https://openalex.org/W2137450588","https://openalex.org/W2137587206","https://openalex.org/W2139818289","https://openalex.org/W2140559080","https://openalex.org/W2154721456","https://openalex.org/W2164786197","https://openalex.org/W2165021720","https://openalex.org/W2167691539","https://openalex.org/W4241797254"],"related_works":["https://openalex.org/W1997094739","https://openalex.org/W2324735944","https://openalex.org/W2810855996","https://openalex.org/W2887592759","https://openalex.org/W1969967781","https://openalex.org/W2532634286","https://openalex.org/W3005418585","https://openalex.org/W2625492010","https://openalex.org/W2529726517","https://openalex.org/W2011056613"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2016-06-24T00:00:00"}
