{"id":"https://openalex.org/W2093835284","doi":"https://doi.org/10.1007/s10822-006-9081-z","title":"Molecular dynamics simulations on the inhibition of Cyclin-Dependent Kinases 2 and 5 in the presence of activators","display_name":"Molecular dynamics simulations on the inhibition of Cyclin-Dependent Kinases 2 and 5 in the presence of activators","publication_year":2006,"publication_date":"2006-10-12","ids":{"openalex":"https://openalex.org/W2093835284","doi":"https://doi.org/10.1007/s10822-006-9081-z","mag":"2093835284","pmid":"https://pubmed.ncbi.nlm.nih.gov/17054019"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-006-9081-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-006-9081-z","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104929520","display_name":"Bing Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["CN","SG"],"is_corresponding":false,"raw_author_name":"Bing Zhang","raw_affiliation_strings":["Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576 Singapore, Singapore","Department of Chemistry, Zhejiang University, Hangzhou, P.R. China","Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576 Singapore, Singapore","institution_ids":[]},{"raw_affiliation_string":"Department of Chemistry, Zhejiang University, Hangzhou, P.R. China","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100685550","display_name":"V.B.C. Tan","orcid":"https://orcid.org/0000-0003-1436-5337"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Vincent B. C. Tan","raw_affiliation_strings":["Department of Mechanical Engineering, National University of Singapore, S117576, Singapore, Singapore","Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576, Singapore, Singapore","Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore","Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, National University of Singapore, S117576, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010988075","display_name":"Kian Meng Lim","orcid":"https://orcid.org/0000-0003-4311-9223"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kian Meng Lim","raw_affiliation_strings":["Department of Mechanical Engineering, National University of Singapore, S117576, Singapore, Singapore","Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576, Singapore, Singapore","Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore","Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, National University of Singapore, S117576, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077589852","display_name":"T.E. Tay","orcid":"https://orcid.org/0000-0002-2846-1947"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Tong Earn Tay","raw_affiliation_strings":["Department of Mechanical Engineering, National University of Singapore, S117576, Singapore, Singapore","Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576, Singapore, Singapore","Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore","Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, National University of Singapore, S117576, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, S117576, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Nanoscience and Nanotechnolgy Initiative, National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Department of Mechanical Engineering, National University of Singapore, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100685550"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":0.6122,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.69260625,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"6","first_page":"395","last_page":"404"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10583","display_name":"Cancer-related Molecular Pathways","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10583","display_name":"Cancer-related Molecular Pathways","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12829","display_name":"Advanced Breast Cancer Therapies","score":0.9703999757766724,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cyclin-dependent-kinase","display_name":"Cyclin-dependent kinase","score":0.9255430698394775},{"id":"https://openalex.org/keywords/cyclin-dependent-kinase-5","display_name":"Cyclin-dependent kinase 5","score":0.7305668592453003},{"id":"https://openalex.org/keywords/cyclin-dependent-kinase-2","display_name":"Cyclin-dependent kinase 2","score":0.7268228530883789},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.6997387409210205},{"id":"https://openalex.org/keywords/activator","display_name":"Activator (genetics)","score":0.6509016752243042},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.42903801798820496},{"id":"https://openalex.org/keywords/cdk-inhibitor","display_name":"CDK inhibitor","score":0.41471874713897705},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4083724021911621},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3892664909362793},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.38758009672164917},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.36751943826675415},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3436748683452606},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.27882927656173706},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.2539088726043701},{"id":"https://openalex.org/keywords/cell-cycle","display_name":"Cell cycle","score":0.1568554937839508},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.07987958192825317},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.07126608490943909}],"concepts":[{"id":"https://openalex.org/C124320809","wikidata":"https://www.wikidata.org/wiki/Q46292","display_name":"Cyclin-dependent kinase","level":4,"score":0.9255430698394775},{"id":"https://openalex.org/C121738310","wikidata":"https://www.wikidata.org/wiki/Q18248262","display_name":"Cyclin-dependent kinase 5","level":5,"score":0.7305668592453003},{"id":"https://openalex.org/C82495950","wikidata":"https://www.wikidata.org/wiki/Q14911732","display_name":"Cyclin-dependent kinase 2","level":4,"score":0.7268228530883789},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.6997387409210205},{"id":"https://openalex.org/C88045685","wikidata":"https://www.wikidata.org/wiki/Q174576","display_name":"Activator (genetics)","level":3,"score":0.6509016752243042},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.42903801798820496},{"id":"https://openalex.org/C2778298596","wikidata":"https://www.wikidata.org/wiki/Q17143494","display_name":"CDK inhibitor","level":5,"score":0.41471874713897705},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4083724021911621},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3892664909362793},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.38758009672164917},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.36751943826675415},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3436748683452606},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.27882927656173706},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.2539088726043701},{"id":"https://openalex.org/C29537977","wikidata":"https://www.wikidata.org/wiki/Q188941","display_name":"Cell cycle","level":3,"score":0.1568554937839508},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.07987958192825317},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.07126608490943909},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D004791","descriptor_name":"Enzyme Inhibitors","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D020536","descriptor_name":"Enzyme Activators","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D020536","descriptor_name":"Enzyme Activators","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D020536","descriptor_name":"Enzyme Activators","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D051360","descriptor_name":"Cyclin-Dependent Kinase 5","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D051360","descriptor_name":"Cyclin-Dependent Kinase 5","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false},{"descriptor_ui":"D051360","descriptor_name":"Cyclin-Dependent Kinase 5","qualifier_ui":"Q000037","qualifier_name":"antagonists & inhibitors","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10822-006-9081-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-006-9081-z","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},{"id":"pmid:17054019","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17054019","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computer-aided molecular design","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/60826","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/60826","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6600000262260437}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1549357029","https://openalex.org/W1563116834","https://openalex.org/W1964830067","https://openalex.org/W1966954300","https://openalex.org/W1968720837","https://openalex.org/W1969345506","https://openalex.org/W1969939692","https://openalex.org/W1970242273","https://openalex.org/W1971140803","https://openalex.org/W1975898379","https://openalex.org/W1976499671","https://openalex.org/W1977820396","https://openalex.org/W1977971438","https://openalex.org/W1978276744","https://openalex.org/W1979504859","https://openalex.org/W1979960709","https://openalex.org/W1980075189","https://openalex.org/W1980390078","https://openalex.org/W1994066190","https://openalex.org/W1994540594","https://openalex.org/W2007477974","https://openalex.org/W2010992064","https://openalex.org/W2029080338","https://openalex.org/W2036804890","https://openalex.org/W2046847991","https://openalex.org/W2063658549","https://openalex.org/W2063831812","https://openalex.org/W2064458095","https://openalex.org/W2065386885","https://openalex.org/W2066669204","https://openalex.org/W2067174909","https://openalex.org/W2075369230","https://openalex.org/W2080443370","https://openalex.org/W2084810833","https://openalex.org/W2090627231","https://openalex.org/W2102537419","https://openalex.org/W2103231366","https://openalex.org/W2104373322","https://openalex.org/W2106140689","https://openalex.org/W2109574319","https://openalex.org/W2110414140","https://openalex.org/W2115346062","https://openalex.org/W2117743221","https://openalex.org/W2122199548","https://openalex.org/W2135129680","https://openalex.org/W2137249911","https://openalex.org/W2138072853","https://openalex.org/W2151498829","https://openalex.org/W2153451248","https://openalex.org/W2158534713","https://openalex.org/W2161221064","https://openalex.org/W2164703923","https://openalex.org/W2166317851","https://openalex.org/W2301131921","https://openalex.org/W2311078281","https://openalex.org/W2949985550","https://openalex.org/W6630865541"],"related_works":["https://openalex.org/W2739915749","https://openalex.org/W2119763652","https://openalex.org/W2994492843","https://openalex.org/W2607604122","https://openalex.org/W2032184590","https://openalex.org/W2060823646","https://openalex.org/W1506524128","https://openalex.org/W2955082821","https://openalex.org/W2138852914","https://openalex.org/W2789339249"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
