{"id":"https://openalex.org/W2000607259","doi":"https://doi.org/10.1007/s10822-006-9052-4","title":"BRUTUS: Optimization of a grid-based similarity function for rigid-body molecular superposition. II. Description and characterization","display_name":"BRUTUS: Optimization of a grid-based similarity function for rigid-body molecular superposition. II. Description and characterization","publication_year":2006,"publication_date":"2006-04-01","ids":{"openalex":"https://openalex.org/W2000607259","doi":"https://doi.org/10.1007/s10822-006-9052-4","mag":"2000607259"},"language":"en","primary_location":{"id":"doi:10.1007/s10822-006-9052-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-006-9052-4","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060625308","display_name":"Toni R\u00f6nkk\u00f6","orcid":null},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I4210092991","display_name":"Kuopio University Hospital","ror":"https://ror.org/00fqdfs68","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210092991"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Toni R\u00f6nkk\u00f6","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","University of Kuopio"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]},{"raw_affiliation_string":"University of Kuopio","institution_ids":["https://openalex.org/I4210092991"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001327594","display_name":"Anu J. Tervo","orcid":null},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I4210116875","display_name":"AstraZeneca (Brazil)","ror":"https://ror.org/026m9xy48","country_code":"BR","type":"company","lineage":["https://openalex.org/I105036370","https://openalex.org/I4210116875"]},{"id":"https://openalex.org/I4210092991","display_name":"Kuopio University Hospital","ror":"https://ror.org/00fqdfs68","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210092991"]}],"countries":["BR","FI"],"is_corresponding":false,"raw_author_name":"Anu J. Tervo","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","University of Kuopio","AstraZeneca R&D M\u00f6lndal"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]},{"raw_affiliation_string":"University of Kuopio","institution_ids":["https://openalex.org/I4210092991"]},{"raw_affiliation_string":"AstraZeneca R&D M\u00f6lndal","institution_ids":["https://openalex.org/I4210116875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086221286","display_name":"Jussi Parkkinen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210106278","display_name":"Joensuu Science Park","ror":"https://ror.org/01j45tp19","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210106278"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]},{"id":"https://openalex.org/I4210092991","display_name":"Kuopio University Hospital","ror":"https://ror.org/00fqdfs68","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210092991"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jussi Parkkinen","raw_affiliation_strings":["Department of Computer Science, University of Joensuu, P.O. Box 111, FIN-80101, Joensuu, Finland","Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","University of Kuopio"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Joensuu, P.O. Box 111, FIN-80101, Joensuu, Finland","institution_ids":["https://openalex.org/I4210106278"]},{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]},{"raw_affiliation_string":"University of Kuopio","institution_ids":["https://openalex.org/I4210092991"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074083544","display_name":"Antti Poso","orcid":"https://orcid.org/0000-0003-4196-4204"},"institutions":[{"id":"https://openalex.org/I4210092991","display_name":"Kuopio University Hospital","ror":"https://ror.org/00fqdfs68","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210092991"]},{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Antti Poso","raw_affiliation_strings":["Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","University of Kuopio"],"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Chemistry, University of Kuopio, P.O. Box 1627, FIN-70211, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]},{"raw_affiliation_string":"University of Kuopio","institution_ids":["https://openalex.org/I4210092991"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060625308"],"corresponding_institution_ids":["https://openalex.org/I175532246","https://openalex.org/I4210092991"],"apc_list":{"value":2890,"currency":"EUR","value_usd":3690},"apc_paid":null,"fwci":1.0834,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.74302796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"20","issue":"4","first_page":"227","last_page":"236"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pentium","display_name":"Pentium","score":0.860600471496582},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.8490615487098694},{"id":"https://openalex.org/keywords/superposition-principle","display_name":"Superposition principle","score":0.7892842888832092},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.6875810623168945},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6832310557365417},{"id":"https://openalex.org/keywords/interpolation","display_name":"Interpolation (computer graphics)","score":0.6105253100395203},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5571573972702026},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.512045681476593},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.5105786919593811},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.49121493101119995},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4559815526008606},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4489648640155792},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4032597541809082},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.38766181468963623},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3478429913520813},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26628294587135315},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.22668683528900146},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22611191868782043},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1688510775566101},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.08533033728599548}],"concepts":[{"id":"https://openalex.org/C46268123","wikidata":"https://www.wikidata.org/wiki/Q214314","display_name":"Pentium","level":2,"score":0.860600471496582},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.8490615487098694},{"id":"https://openalex.org/C27753989","wikidata":"https://www.wikidata.org/wiki/Q284885","display_name":"Superposition principle","level":2,"score":0.7892842888832092},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.6875810623168945},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6832310557365417},{"id":"https://openalex.org/C137800194","wikidata":"https://www.wikidata.org/wiki/Q11713455","display_name":"Interpolation (computer graphics)","level":3,"score":0.6105253100395203},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5571573972702026},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.512045681476593},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.5105786919593811},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.49121493101119995},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4559815526008606},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4489648640155792},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4032597541809082},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.38766181468963623},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3478429913520813},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26628294587135315},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.22668683528900146},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22611191868782043},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1688510775566101},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.08533033728599548},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104114177","wikidata":"https://www.wikidata.org/wiki/Q79782","display_name":"Motion (physics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10822-006-9052-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10822-006-9052-4","pdf_url":null,"source":{"id":"https://openalex.org/S64621741","display_name":"Journal of Computer-Aided Molecular Design","issn_l":"0920-654X","issn":["0920-654X","1573-4951"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computer-Aided Molecular Design","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.8799999952316284,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1485470823","https://openalex.org/W1493926273","https://openalex.org/W1503820821","https://openalex.org/W1521042556","https://openalex.org/W1707232238","https://openalex.org/W1795280187","https://openalex.org/W1971458166","https://openalex.org/W2006569276","https://openalex.org/W2006690943","https://openalex.org/W2009324105","https://openalex.org/W2012132740","https://openalex.org/W2012971796","https://openalex.org/W2026797273","https://openalex.org/W2033160647","https://openalex.org/W2047509756","https://openalex.org/W2063060349","https://openalex.org/W2064543138","https://openalex.org/W2066804401","https://openalex.org/W2076080344","https://openalex.org/W2077091828","https://openalex.org/W2082670236","https://openalex.org/W2090069426","https://openalex.org/W2093451114","https://openalex.org/W2125253492","https://openalex.org/W2128607364","https://openalex.org/W2144659448","https://openalex.org/W2155686036","https://openalex.org/W2161035996","https://openalex.org/W2163349372","https://openalex.org/W2166036342","https://openalex.org/W3204193629","https://openalex.org/W4293862247"],"related_works":["https://openalex.org/W1597195064","https://openalex.org/W2915007006","https://openalex.org/W2129938370","https://openalex.org/W3164835776","https://openalex.org/W2230641373","https://openalex.org/W2059230675","https://openalex.org/W2376003823","https://openalex.org/W2594726310","https://openalex.org/W2355193834","https://openalex.org/W2907597838"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
