{"id":"https://openalex.org/W2761451290","doi":"https://doi.org/10.1007/s10766-017-0524-z","title":"Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive","display_name":"Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive","publication_year":2017,"publication_date":"2017-10-07","ids":{"openalex":"https://openalex.org/W2761451290","doi":"https://doi.org/10.1007/s10766-017-0524-z","mag":"2761451290"},"language":"en","primary_location":{"id":"doi:10.1007/s10766-017-0524-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10766-017-0524-z","pdf_url":null,"source":{"id":"https://openalex.org/S148521650","display_name":"International Journal of Parallel Programming","issn_l":"0885-7458","issn":["0885-7458","1573-7640"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Parallel Programming","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.osti.gov/biblio/1532334","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103153385","display_name":"Lin Han","orcid":"https://orcid.org/0000-0001-7666-0150"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Han Lin","raw_affiliation_strings":["University of Science and Technology of China, Hefei, 230026, Anhui, China","University of Science and Technology of China, Hefei, China"],"raw_orcid":"https://orcid.org/0000-0001-7666-0150","affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070905264","display_name":"Zhichao Su","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhichao Su","raw_affiliation_strings":["University of Science and Technology of China, Hefei, 230026, Anhui, China","University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077701341","display_name":"Xiandong Meng","orcid":"https://orcid.org/0000-0002-3382-5274"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiandong Meng","raw_affiliation_strings":["DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]},{"raw_affiliation_string":"DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100806000","display_name":"Xu Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu Jin","raw_affiliation_strings":["University of Science and Technology of China, Hefei, 230026, Anhui, China","University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100781872","display_name":"Zhong Wang","orcid":"https://orcid.org/0000-0002-6307-0458"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhong Wang","raw_affiliation_strings":["DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]},{"raw_affiliation_string":"DOE Joint Genome Institute and Lawrence Berkeley National Laboratory, Berkeley, USA","institution_ids":["https://openalex.org/I196679689","https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108198361","display_name":"Wenting Han","orcid":null},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenting Han","raw_affiliation_strings":["University of Science and Technology of China, Hefei, 230026, Anhui, China","University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085758579","display_name":"Hong An","orcid":"https://orcid.org/0000-0002-3900-3722"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong An","raw_affiliation_strings":["University of Science and Technology of China, Hefei, 230026, Anhui, China","University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014824535","display_name":"Mengxian Chi","orcid":"https://orcid.org/0000-0002-3538-5233"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengxian Chi","raw_affiliation_strings":["University of Science and Technology of China, Hefei, 230026, Anhui, China","University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101486931","display_name":"Zheng Wu","orcid":"https://orcid.org/0000-0002-3661-5360"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Wu","raw_affiliation_strings":["University of Science and Technology of China, Hefei, 230026, Anhui, China","University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Science and Technology of China, Hefei, 230026, Anhui, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5103153385"],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.2193,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59614281,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"46","issue":"4","first_page":"762","last_page":"775"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8535000085830688},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.8421220779418945},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8407993316650391},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.8083557486534119},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7385753393173218},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5698933005332947},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4711398482322693},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.46540290117263794},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38785290718078613},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3236614465713501},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1952577531337738},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08097508549690247},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07577365636825562}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8535000085830688},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.8421220779418945},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8407993316650391},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.8083557486534119},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7385753393173218},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5698933005332947},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4711398482322693},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.46540290117263794},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38785290718078613},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3236614465713501},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1952577531337738},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08097508549690247},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07577365636825562},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/s10766-017-0524-z","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10766-017-0524-z","pdf_url":null,"source":{"id":"https://openalex.org/S148521650","display_name":"International Journal of Parallel Programming","issn_l":"0885-7458","issn":["0885-7458","1573-7640"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Parallel Programming","raw_type":"journal-article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt2s45b05r","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/2s45b05r","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Parallel Programming, vol 46, iss 4","raw_type":"article"},{"id":"pmh:oai:osti.gov:1532334","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1532334","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:qt2s45b05r","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/2s45b05r","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lin, H; Su, Z; Meng, X; Jin, X; Wang, Z; Han, W; \u00c2\u00a0et al.(2018). Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive. International Journal of Parallel Programming, 46(4), 762 - 775. doi: 10.1007/s10766-017-0524-z. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/2s45b05r","raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:osti.gov:1532334","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1532334","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5177967333","display_name":null,"funder_award_id":"2016YFB1000403","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1123101191","https://openalex.org/W1515811018","https://openalex.org/W1969346416","https://openalex.org/W1974396493","https://openalex.org/W1986022261","https://openalex.org/W1988888548","https://openalex.org/W2058340614","https://openalex.org/W2079955672","https://openalex.org/W2081612620","https://openalex.org/W2088011174","https://openalex.org/W2098935637","https://openalex.org/W2105947650","https://openalex.org/W2118526609","https://openalex.org/W2143377027","https://openalex.org/W2149059931","https://openalex.org/W2173213060","https://openalex.org/W2189125735","https://openalex.org/W2189465200","https://openalex.org/W2275908958","https://openalex.org/W2399830453","https://openalex.org/W2585711475","https://openalex.org/W2613579336"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2027972911","https://openalex.org/W2146343568","https://openalex.org/W2013643406","https://openalex.org/W2157978810","https://openalex.org/W2597809628","https://openalex.org/W3046370962"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
