{"id":"https://openalex.org/W2952710849","doi":"https://doi.org/10.1007/s10723-018-9450-6","title":"Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins","display_name":"Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins","publication_year":2018,"publication_date":"2018-07-28","ids":{"openalex":"https://openalex.org/W2952710849","doi":"https://doi.org/10.1007/s10723-018-9450-6","mag":"2952710849"},"language":"en","primary_location":{"id":"doi:10.1007/s10723-018-9450-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10723-018-9450-6","pdf_url":null,"source":{"id":"https://openalex.org/S140218187","display_name":"Journal of Grid Computing","issn_l":"1570-7873","issn":["1570-7873","1572-9184"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Grid Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053057903","display_name":"Mohammad Nauman","orcid":"https://orcid.org/0000-0003-0941-2549"},"institutions":[{"id":"https://openalex.org/I201384688","display_name":"National University of Computer and Emerging Sciences","ror":"https://ror.org/003eyb898","country_code":"PK","type":"education","lineage":["https://openalex.org/I201384688"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Mohammad Nauman","raw_affiliation_strings":["FAST National University of Computer and Emerging Sciences, Peshawar, 25000, Pakistan","FAST National University of Computer and Emerging Sciences, Peshawar, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"FAST National University of Computer and Emerging Sciences, Peshawar, 25000, Pakistan","institution_ids":["https://openalex.org/I201384688"]},{"raw_affiliation_string":"FAST National University of Computer and Emerging Sciences, Peshawar, Pakistan","institution_ids":["https://openalex.org/I201384688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101992964","display_name":"Hafeez Ur Rehman","orcid":"https://orcid.org/0000-0002-3274-6347"},"institutions":[{"id":"https://openalex.org/I201384688","display_name":"National University of Computer and Emerging Sciences","ror":"https://ror.org/003eyb898","country_code":"PK","type":"education","lineage":["https://openalex.org/I201384688"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Hafeez Ur Rehman","raw_affiliation_strings":["FAST National University of Computer and Emerging Sciences, Peshawar, 25000, Pakistan","FAST National University of Computer and Emerging Sciences, Peshawar, Pakistan"],"raw_orcid":"https://orcid.org/0000-0002-3274-6347","affiliations":[{"raw_affiliation_string":"FAST National University of Computer and Emerging Sciences, Peshawar, 25000, Pakistan","institution_ids":["https://openalex.org/I201384688"]},{"raw_affiliation_string":"FAST National University of Computer and Emerging Sciences, Peshawar, Pakistan","institution_ids":["https://openalex.org/I201384688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078555784","display_name":"Gianfranco Politano","orcid":"https://orcid.org/0000-0001-5268-9899"},"institutions":[{"id":"https://openalex.org/I177477856","display_name":"Politecnico di Torino","ror":"https://ror.org/00bgk9508","country_code":"IT","type":"education","lineage":["https://openalex.org/I177477856"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianfranco Politano","raw_affiliation_strings":["Department of Computer & Control Engineering, Politecnico di Torino, I-10129, Torino, Italy","Department of Computer & Control Engineering, Politecnico di Torino, Torino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer & Control Engineering, Politecnico di Torino, I-10129, Torino, Italy","institution_ids":["https://openalex.org/I177477856"]},{"raw_affiliation_string":"Department of Computer & Control Engineering, Politecnico di Torino, Torino, Italy","institution_ids":["https://openalex.org/I177477856"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030177680","display_name":"Alfredo Benso","orcid":"https://orcid.org/0000-0003-3433-7739"},"institutions":[{"id":"https://openalex.org/I177477856","display_name":"Politecnico di Torino","ror":"https://ror.org/00bgk9508","country_code":"IT","type":"education","lineage":["https://openalex.org/I177477856"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Benso","raw_affiliation_strings":["Department of Computer & Control Engineering, Politecnico di Torino, I-10129, Torino, Italy","Department of Computer & Control Engineering, Politecnico di Torino, Torino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer & Control Engineering, Politecnico di Torino, I-10129, Torino, Italy","institution_ids":["https://openalex.org/I177477856"]},{"raw_affiliation_string":"Department of Computer & Control Engineering, Politecnico di Torino, Torino, Italy","institution_ids":["https://openalex.org/I177477856"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101992964"],"corresponding_institution_ids":["https://openalex.org/I201384688"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":null,"fwci":2.2267,"has_fulltext":false,"cited_by_count":52,"citation_normalized_percentile":{"value":0.89207163,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"17","issue":"2","first_page":"225","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7875586748123169},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6252758502960205},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6090044975280762},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6088709235191345},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5578299760818481},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5253797769546509},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5211122632026672},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48403066396713257},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4197394847869873},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4133448600769043},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4132942259311676},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4026150703430176},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.34904223680496216},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.29609304666519165},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1332876980304718},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0893574059009552},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08143401145935059}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7875586748123169},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6252758502960205},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6090044975280762},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6088709235191345},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5578299760818481},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5253797769546509},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5211122632026672},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48403066396713257},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4197394847869873},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4133448600769043},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4132942259311676},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4026150703430176},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.34904223680496216},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.29609304666519165},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1332876980304718},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0893574059009552},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08143401145935059},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10723-018-9450-6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10723-018-9450-6","pdf_url":null,"source":{"id":"https://openalex.org/S140218187","display_name":"Journal of Grid Computing","issn_l":"1570-7873","issn":["1570-7873","1572-9184"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Grid Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6372975983","display_name":null,"funder_award_id":"21-915/SRGP/R&D/HEC/2016","funder_id":"https://openalex.org/F4320322799","funder_display_name":"Higher Education Commission, Pakistan"}],"funders":[{"id":"https://openalex.org/F4320322799","display_name":"Higher Education Commission, Pakistan","ror":"https://ror.org/038y3sz68"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W777381104","https://openalex.org/W1490161904","https://openalex.org/W1506427777","https://openalex.org/W1582171523","https://openalex.org/W1665214252","https://openalex.org/W1836465849","https://openalex.org/W1895577753","https://openalex.org/W1924770834","https://openalex.org/W1998808035","https://openalex.org/W2008056655","https://openalex.org/W2011986160","https://openalex.org/W2034368206","https://openalex.org/W2043199972","https://openalex.org/W2055043387","https://openalex.org/W2057885377","https://openalex.org/W2062227835","https://openalex.org/W2064675550","https://openalex.org/W2083654996","https://openalex.org/W2084144722","https://openalex.org/W2101783948","https://openalex.org/W2102113734","https://openalex.org/W2109715166","https://openalex.org/W2117486996","https://openalex.org/W2119027485","https://openalex.org/W2124386111","https://openalex.org/W2130942839","https://openalex.org/W2131456688","https://openalex.org/W2134026036","https://openalex.org/W2138560091","https://openalex.org/W2145094598","https://openalex.org/W2152896172","https://openalex.org/W2158899491","https://openalex.org/W2163605009","https://openalex.org/W2164461702","https://openalex.org/W2171403830","https://openalex.org/W2171602500","https://openalex.org/W2171815113","https://openalex.org/W2227395312","https://openalex.org/W2250539671","https://openalex.org/W2253429366","https://openalex.org/W2289437094","https://openalex.org/W2739999456","https://openalex.org/W2919115771","https://openalex.org/W2950577311","https://openalex.org/W2953022181","https://openalex.org/W2962896736","https://openalex.org/W2962949994","https://openalex.org/W2964121744","https://openalex.org/W3199143553","https://openalex.org/W4252706339","https://openalex.org/W6604896550"],"related_works":["https://openalex.org/W4380075502","https://openalex.org/W4223943233","https://openalex.org/W4312200629","https://openalex.org/W1578069856","https://openalex.org/W2067364375","https://openalex.org/W1975589113","https://openalex.org/W2427798428","https://openalex.org/W2116930553","https://openalex.org/W2110115297","https://openalex.org/W1987231763"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
