{"id":"https://openalex.org/W4384408554","doi":"https://doi.org/10.1007/s10664-023-10345-4","title":"Towards a taxonomy of Roxygen documentation in R packages","display_name":"Towards a taxonomy of Roxygen documentation in R packages","publication_year":2023,"publication_date":"2023-07-01","ids":{"openalex":"https://openalex.org/W4384408554","doi":"https://doi.org/10.1007/s10664-023-10345-4"},"language":"en","primary_location":{"id":"doi:10.1007/s10664-023-10345-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10664-023-10345-4","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10664-023-10345-4.pdf","source":{"id":"https://openalex.org/S109852484","display_name":"Empirical Software Engineering","issn_l":"1382-3256","issn":["1382-3256","1573-7616"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Empirical Software Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10664-023-10345-4.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001255062","display_name":"Melina Vidoni","orcid":"https://orcid.org/0000-0002-4099-1430"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Melina Vidoni","raw_affiliation_strings":["Australian National University, CECC School of Computing, Canberra, Australia"],"raw_orcid":"https://orcid.org/0000-0002-4099-1430","affiliations":[{"raw_affiliation_string":"Australian National University, CECC School of Computing, Canberra, Australia","institution_ids":["https://openalex.org/I118347636"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022264168","display_name":"Zadia Codabux","orcid":"https://orcid.org/0000-0001-6715-3341"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Zadia Codabux","raw_affiliation_strings":["Department of Computer Science, University of Saskatchewan, Saskatoon, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001255062","https://openalex.org/A5022264168"],"corresponding_institution_ids":["https://openalex.org/I118347636","https://openalex.org/I32625721"],"apc_list":{"value":2290,"currency":"USD","value_usd":2290},"apc_paid":{"value":2290,"currency":"USD","value_usd":2290},"fwci":0.8816,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85791443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"28","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.8729076981544495},{"id":"https://openalex.org/keywords/software-documentation","display_name":"Software documentation","score":0.685535728931427},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.649226188659668},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.5913757085800171},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5584610104560852},{"id":"https://openalex.org/keywords/card-sorting","display_name":"Card sorting","score":0.548701822757721},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5202587842941284},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4621677100658417},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.4585518538951874},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.29981642961502075},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2138977348804474},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1661798059940338},{"id":"https://openalex.org/keywords/software-development-process","display_name":"Software development process","score":0.1641453206539154},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.1293260157108307},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.12303042411804199},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08029967546463013}],"concepts":[{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.8729076981544495},{"id":"https://openalex.org/C81587897","wikidata":"https://www.wikidata.org/wiki/Q181702","display_name":"Software documentation","level":5,"score":0.685535728931427},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.649226188659668},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.5913757085800171},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5584610104560852},{"id":"https://openalex.org/C5563205","wikidata":"https://www.wikidata.org/wiki/Q686043","display_name":"Card sorting","level":3,"score":0.548701822757721},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5202587842941284},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4621677100658417},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.4585518538951874},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.29981642961502075},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2138977348804474},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1661798059940338},{"id":"https://openalex.org/C180152950","wikidata":"https://www.wikidata.org/wiki/Q2904257","display_name":"Software development process","level":4,"score":0.1641453206539154},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.1293260157108307},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.12303042411804199},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08029967546463013},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10664-023-10345-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10664-023-10345-4","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10664-023-10345-4.pdf","source":{"id":"https://openalex.org/S109852484","display_name":"Empirical Software Engineering","issn_l":"1382-3256","issn":["1382-3256","1573-7616"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Empirical Software Engineering","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1007/s10664-023-10345-4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10664-023-10345-4","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10664-023-10345-4.pdf","source":{"id":"https://openalex.org/S109852484","display_name":"Empirical Software Engineering","issn_l":"1382-3256","issn":["1382-3256","1573-7616"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Empirical Software Engineering","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1864050537","display_name":null,"funder_award_id":"RGPIN-2021-04232","funder_id":"https://openalex.org/F4320310865","funder_display_name":"University of Saskatchewan"},{"id":"https://openalex.org/G4275882623","display_name":null,"funder_award_id":"DGECR-2021-00283","funder_id":"https://openalex.org/F4320310865","funder_display_name":"University of Saskatchewan"},{"id":"https://openalex.org/G7185932438","display_name":"Improving software quality by managing technical debt and uncovering security vulnerabilities","funder_award_id":"dgecr-2021-00283","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G7831640577","display_name":null,"funder_award_id":"RGPIN-2021-04232","funder_id":"https://openalex.org/F4320334601","funder_display_name":"National Research Council Canada"},{"id":"https://openalex.org/G8828790461","display_name":null,"funder_award_id":"DGECR-2021-00283","funder_id":"https://openalex.org/F4320334601","funder_display_name":"National Research Council Canada"},{"id":"https://openalex.org/G911736384","display_name":"Improving software quality by managing technical debt and uncovering security vulnerabilities","funder_award_id":"rgpin-2021-04232","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320310865","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334601","display_name":"National Research Council Canada","ror":"https://ror.org/04mte1k06"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4384408554.pdf","grobid_xml":"https://content.openalex.org/works/W4384408554.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1481814428","https://openalex.org/W1616264825","https://openalex.org/W1988076867","https://openalex.org/W1990898617","https://openalex.org/W1991613282","https://openalex.org/W2006240110","https://openalex.org/W2008107570","https://openalex.org/W2047794235","https://openalex.org/W2060445097","https://openalex.org/W2071957586","https://openalex.org/W2118435948","https://openalex.org/W2118655104","https://openalex.org/W2123333323","https://openalex.org/W2140952846","https://openalex.org/W2147743860","https://openalex.org/W2224154098","https://openalex.org/W2239505015","https://openalex.org/W2278163684","https://openalex.org/W2295719270","https://openalex.org/W2475556466","https://openalex.org/W2600366513","https://openalex.org/W2612705982","https://openalex.org/W2624649878","https://openalex.org/W2707214624","https://openalex.org/W2727287769","https://openalex.org/W2745864863","https://openalex.org/W2750474513","https://openalex.org/W2753176730","https://openalex.org/W2758161854","https://openalex.org/W2770230381","https://openalex.org/W2775888435","https://openalex.org/W2787561449","https://openalex.org/W2796070554","https://openalex.org/W2884758644","https://openalex.org/W2896566650","https://openalex.org/W2897889469","https://openalex.org/W2898186065","https://openalex.org/W2899335321","https://openalex.org/W2902404751","https://openalex.org/W2924517740","https://openalex.org/W2931915331","https://openalex.org/W2950715953","https://openalex.org/W2953554506","https://openalex.org/W2955439455","https://openalex.org/W2963580508","https://openalex.org/W2963732033","https://openalex.org/W2970481120","https://openalex.org/W2971454149","https://openalex.org/W2979299757","https://openalex.org/W2989807288","https://openalex.org/W2990340259","https://openalex.org/W3004030914","https://openalex.org/W3005131303","https://openalex.org/W3017791537","https://openalex.org/W3099908865","https://openalex.org/W3101835033","https://openalex.org/W3104296510","https://openalex.org/W3104462817","https://openalex.org/W3107676683","https://openalex.org/W3163474313","https://openalex.org/W3208664953","https://openalex.org/W3211999146","https://openalex.org/W4200065965","https://openalex.org/W4213259913","https://openalex.org/W4213340511","https://openalex.org/W4248771513","https://openalex.org/W4256548243","https://openalex.org/W4283763666","https://openalex.org/W4294214983"],"related_works":["https://openalex.org/W1975647310","https://openalex.org/W2033083755","https://openalex.org/W2764664989","https://openalex.org/W2035042871","https://openalex.org/W2884925033","https://openalex.org/W2070076995","https://openalex.org/W2955439455","https://openalex.org/W2411980894","https://openalex.org/W3020062517","https://openalex.org/W2915114672"],"abstract_inverted_index":{"Abstract":[0],"Software":[1],"documentation":[2,26,91],"is":[3,47,102,162],"often":[4],"neglected,":[5],"impacting":[6],"maintenance":[7],"and":[8,10,73,117,152],"reuse":[9],"leading":[11],"to":[12,30,70,104,106,121,183],"technical":[13],"issues.":[14],"In":[15],"particular,":[16],"when":[17],"working":[18],"with":[19,55],"scientific":[20,33,53,189],"software,":[21],"such":[22],"issues":[23],"in":[24,88,130,174,188],"the":[25,44,79,163],"pose":[27],"a":[28,48,56,94,119,123,155],"risk":[29],"producing":[31],"reliable":[32],"results":[34],"as":[35,97],"they":[36],"may":[37],"cause":[38],"improper":[39],"or":[40],"incorrect":[41],"use":[42],"of":[43,114,125,165],"software.":[45],"R":[46,66,115,144],"popular":[49],"programming":[50],"language":[51,127],"for":[52,157,168],"software":[54],"prolific":[57],"package-based":[58],"ecosystem,":[59],"where":[60],"users":[61,75],"contribute":[62,105],"packages":[63,67,116],"(i.e.,":[64],"libraries).":[65],"are":[68],"intended":[69],"be":[71,181],"reused,":[72],"their":[74,89],"rely":[76],"extensively":[77],"on":[78,100,171],"available":[80],"documentation.":[81,132],"Thus,":[82],"understanding":[83],"what":[84],"information":[85],"developers":[86],"provide":[87],"packages\u2019":[90],"(generally,":[92],"through":[93,136],"system":[95],"known":[96],"Roxygen,":[98],"based":[99],"Javadoc)":[101],"essential":[103],"it.":[107],"This":[108,133],"study":[109],"mined":[110],"379":[111],"GitHub":[112],"repositories":[113],"analysed":[118],"sample":[120],"develop":[122],"taxonomy":[124,148,161,179],"natural":[126],"descriptions":[128],"used":[129,187],"Roxygen":[131],"was":[134],"done":[135],"hybrid":[137],"card":[138],"sorting,":[139],"which":[140],"included":[141],"two":[142],"experienced":[143],"developers.":[145],"The":[146],"resulting":[147],"covers":[149],"parameters,":[150],"returns,":[151],"descriptions,":[153],"providing":[154],"baseline":[156],"further":[158],"studies.":[159],"Our":[160],"first":[164],"its":[166],"kind":[167],"R.":[169],"Based":[170],"previous":[172],"studies":[173],"pure":[175],"object-oriented":[176],"languages,":[177],"our":[178],"could":[180],"extensible":[182],"other":[184],"dynamically-typed":[185],"languages":[186],"programming.":[190]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}