{"id":"https://openalex.org/W4285587131","doi":"https://doi.org/10.1007/s10619-022-07414-w","title":"Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation","display_name":"Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation","publication_year":2022,"publication_date":"2022-07-16","ids":{"openalex":"https://openalex.org/W4285587131","doi":"https://doi.org/10.1007/s10619-022-07414-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/36097541"},"language":"en","primary_location":{"id":"doi:10.1007/s10619-022-07414-w","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10619-022-07414-w","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10619-022-07414-w.pdf","source":{"id":"https://openalex.org/S35927321","display_name":"Distributed and Parallel Databases","issn_l":"0926-8782","issn":["0926-8782","1573-7578"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Distributed and Parallel Databases","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10619-022-07414-w.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032183252","display_name":"Ana Claudia Sima","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Ana Claudia Sima","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018439383","display_name":"Tarcisio Mendes de Farias","orcid":"https://orcid.org/0000-0002-3175-5372"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Tarcisio Mendes de Farias","raw_affiliation_strings":["Department of Computational Biology, University of Lausanne, Lausanne, Switzerland","Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046692009","display_name":"Maria Anisimova","orcid":"https://orcid.org/0000-0001-8145-7966"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I858936495","display_name":"ZHAW Zurich University of Applied Sciences","ror":"https://ror.org/05pmsvm27","country_code":"CH","type":"education","lineage":["https://openalex.org/I858936495"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Maria Anisimova","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","ZHAW Zurich University of Applied Sciences, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"ZHAW Zurich University of Applied Sciences, Zurich, Switzerland","institution_ids":["https://openalex.org/I858936495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050068380","display_name":"Christophe Dessimoz","orcid":"https://orcid.org/0000-0002-2170-853X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Christophe Dessimoz","raw_affiliation_strings":["Department of Computational Biology, University of Lausanne, Lausanne, Switzerland","Department of Computer Science, University College London, London, UK","Department of Genetics, Evolution, and Environment, University College London, London, UK","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Department of Computer Science, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Department of Genetics, Evolution, and Environment, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054250703","display_name":"Marc Robinson\u2010Rechavi","orcid":"https://orcid.org/0000-0002-3437-3329"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marc Robinson-Rechavi","raw_affiliation_strings":["Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070408124","display_name":"Erich Zbinden","orcid":"https://orcid.org/0000-0002-5222-9638"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I858936495","display_name":"ZHAW Zurich University of Applied Sciences","ror":"https://ror.org/05pmsvm27","country_code":"CH","type":"education","lineage":["https://openalex.org/I858936495"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Erich Zbinden","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","ZHAW Zurich University of Applied Sciences, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"ZHAW Zurich University of Applied Sciences, Zurich, Switzerland","institution_ids":["https://openalex.org/I858936495"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074825049","display_name":"Kurt Stockinger","orcid":"https://orcid.org/0000-0003-4034-4812"},"institutions":[{"id":"https://openalex.org/I858936495","display_name":"ZHAW Zurich University of Applied Sciences","ror":"https://ror.org/05pmsvm27","country_code":"CH","type":"education","lineage":["https://openalex.org/I858936495"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kurt Stockinger","raw_affiliation_strings":["ZHAW Zurich University of Applied Sciences, Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ZHAW Zurich University of Applied Sciences, Zurich, Switzerland","institution_ids":["https://openalex.org/I858936495"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5032183252"],"corresponding_institution_ids":["https://openalex.org/I12708293"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":{"value":2390,"currency":"EUR","value_usd":2990},"fwci":0.971,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.79545229,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"40","issue":"2-3","first_page":"409","last_page":"440"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8745551109313965},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.7886894941329956},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.7269067168235779},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.604128897190094},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.47550496459007263},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4662166237831116},{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.4365847408771515},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4284853935241699},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.36336779594421387},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.32672107219696045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3036908805370331},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.111020028591156}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8745551109313965},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.7886894941329956},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.7269067168235779},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.604128897190094},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.47550496459007263},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4662166237831116},{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.4365847408771515},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4284853935241699},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.36336779594421387},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.32672107219696045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3036908805370331},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.111020028591156},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1007/s10619-022-07414-w","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10619-022-07414-w","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10619-022-07414-w.pdf","source":{"id":"https://openalex.org/S35927321","display_name":"Distributed and Parallel Databases","issn_l":"0926-8782","issn":["0926-8782","1573-7578"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Distributed and Parallel Databases","raw_type":"journal-article"},{"id":"pmid:36097541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36097541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Distributed and parallel databases","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_EE90AD3795B0","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_EE90AD3795B0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Distributed and parallel databases, vol. 40, no. 2-3, pp. 409-440","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/255261","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/255261","pdf_url":"https://iris.unil.ch/bitstreams/c322fa22-b9c0-4121-b0a5-2198e94fb2d5/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"review article"},{"id":"pmh:oai:digitalcollection.zhaw.ch:11475/25368","is_oa":true,"landing_page_url":"https://hdl.handle.net/11475/25368","pdf_url":null,"source":{"id":"https://openalex.org/S4306401811","display_name":"Z\u00fcrcher Hochschule f\u00fcr Angewandte Wissenschaften digital collection (Zurich University of Applied Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200744771","host_organization_name":"ZHAW Zurich University of Applied Sciences","host_organization_lineage":["https://openalex.org/I200744771"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:10153327","is_oa":false,"landing_page_url":"https://discovery.ucl.ac.uk/id/eprint/10153327/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Distributed and Parallel Databases       (2022)      ","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9458692","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9458692","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Distrib Parallel Databases","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/s10619-022-07414-w","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10619-022-07414-w","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10619-022-07414-w.pdf","source":{"id":"https://openalex.org/S35927321","display_name":"Distributed and Parallel Databases","issn_l":"0926-8782","issn":["0926-8782","1573-7578"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Distributed and Parallel Databases","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.4099999964237213,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G4064820713","display_name":null,"funder_award_id":"407540_167149","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G6189894211","display_name":null,"funder_award_id":"407540 167149","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320323831","display_name":"Universit\u00e9 de Lausanne","ror":"https://ror.org/019whta54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4285587131.pdf","grobid_xml":"https://content.openalex.org/works/W4285587131.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W80422862","https://openalex.org/W2032299694","https://openalex.org/W2104583100","https://openalex.org/W2111576850","https://openalex.org/W2123142779","https://openalex.org/W2157749290","https://openalex.org/W2169634223","https://openalex.org/W2222620250","https://openalex.org/W2243052854","https://openalex.org/W2260667602","https://openalex.org/W2265741522","https://openalex.org/W2269738476","https://openalex.org/W2366359788","https://openalex.org/W2488700629","https://openalex.org/W2534608142","https://openalex.org/W2536574992","https://openalex.org/W2600074498","https://openalex.org/W2605089588","https://openalex.org/W2763039547","https://openalex.org/W2805117467","https://openalex.org/W2807418422","https://openalex.org/W2889276770","https://openalex.org/W2890431379","https://openalex.org/W2946693801","https://openalex.org/W2950067395","https://openalex.org/W2980401255","https://openalex.org/W2980737818","https://openalex.org/W2983504480","https://openalex.org/W2983941894","https://openalex.org/W2988898811","https://openalex.org/W2997028620","https://openalex.org/W3029624308","https://openalex.org/W3091866222","https://openalex.org/W3099252223","https://openalex.org/W3101096381","https://openalex.org/W3105512395","https://openalex.org/W3156729426","https://openalex.org/W3175875201","https://openalex.org/W4224239544","https://openalex.org/W6602617507","https://openalex.org/W6605371477"],"related_works":["https://openalex.org/W2615202182","https://openalex.org/W4206665951","https://openalex.org/W2529794967","https://openalex.org/W2904139343","https://openalex.org/W2604011835","https://openalex.org/W3139465322","https://openalex.org/W2484233589","https://openalex.org/W2528203718","https://openalex.org/W4241483715","https://openalex.org/W2768092701"],"abstract_inverted_index":{"Abstract":[0],"The":[1],"problem":[2],"of":[3,39,99,106,128,149,167,202,216,246],"natural":[4,60,100,115,254],"language":[5,61,101,116,255],"processing":[6,102,117],"over":[7,33,103,191],"structured":[8],"data":[9,88,124,260],"has":[10],"become":[11],"a":[12,59,114,137,146,156,165,235],"growing":[13],"research":[14],"field,":[15],"both":[16],"within":[17],"the":[18,22,69,97,126,171,186,199,244,259],"relational":[19],"database":[20],"and":[21,219,250],"Semantic":[23],"Web":[24],"community,":[25],"with":[26,178],"significant":[27],"efforts":[28],"involved":[29],"in":[30,65,125,243,251,262],"question":[31,48,62],"answering":[32,49],"knowledge":[34,70,104,248],"graphs":[35,105,249],"(KGQA).":[36],"However,":[37],"many":[38],"these":[40,73,263],"approaches":[41,74],"are":[42],"either":[43],"specifically":[44],"targeted":[45],"at":[46],"open-domain":[47],"using":[50],"DBpedia,":[51],"or":[52],"require":[53,122],"large":[54,247],"training":[55,87,123],"datasets":[56,83,180],"to":[57,63,67,80,145,240],"translate":[58],"SPARQL":[64,133,150,173],"order":[66],"query":[68],"graph.":[71],"Hence,":[72],"often":[75],"cannot":[76],"be":[77],"applied":[78],"directly":[79],"complex":[81,227],"scientific":[82,107,183],"where":[84],"no":[85],"prior":[86],"is":[89],"available.":[90],"In":[91,109],"this":[92],"paper,":[93],"we":[94,111,231],"focus":[95],"on":[96,225],"challenges":[98],"datasets.":[108,229],"particular,":[110],"introduce":[112,232],"Bio-SODA,":[113],"engine":[118],"that":[119,160,206,257],"does":[120],"not":[121],"form":[127],"question-answer":[129],"pairs":[130],"for":[131,141,169],"generating":[132],"queries.":[134,152],"Bio-SODA":[135,154,207,233],"uses":[136,155],"generic":[138],"graph-based":[139],"approach":[140],"translating":[142],"user":[143,237],"questions":[144,256],"ranked":[147],"list":[148],"candidate":[151,174],"Furthermore,":[153],"novel":[157],"ranking":[158],"algorithm":[159],"includes":[161],"node":[162],"centrality":[163],"as":[164,196,198],"measure":[166],"relevance":[168],"selecting":[170],"best":[172],"query.":[175],"Our":[176],"experiments":[177],"real-world":[179],"across":[181],"several":[182],"domains,":[184],"including":[185],"official":[187],"bioinformatics":[188,228],"Question":[189],"Answering":[190],"Linked":[192],"Data":[193],"(QALD)":[194],"challenge,":[195],"well":[197],"CORDIS":[200],"dataset":[201],"European":[203],"projects,":[204],"show":[205],"outperforms":[208],"publicly":[209],"available":[210,261],"KGQA":[211],"systems":[212],"by":[213,220],"an":[214,221],"F1-score":[215],"least":[217],"20%":[218],"even":[222],"higher":[223],"factor":[224],"more":[226],"Finally,":[230],"UX,":[234],"graphical":[236],"interface":[238],"designed":[239],"assist":[241],"users":[242],"exploration":[245],"dynamically":[252],"disambiguating":[253],"target":[258],"graphs.":[264]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
