{"id":"https://openalex.org/W2616508114","doi":"https://doi.org/10.1007/s10618-018-0584-8","title":"Estimating sequence similarity from read sets for clustering next-generation sequencing data","display_name":"Estimating sequence similarity from read sets for clustering next-generation sequencing data","publication_year":2018,"publication_date":"2018-08-04","ids":{"openalex":"https://openalex.org/W2616508114","doi":"https://doi.org/10.1007/s10618-018-0584-8","mag":"2616508114"},"language":"en","primary_location":{"id":"doi:10.1007/s10618-018-0584-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10618-018-0584-8","pdf_url":null,"source":{"id":"https://openalex.org/S121920818","display_name":"Data Mining and Knowledge Discovery","issn_l":"1384-5810","issn":["1384-5810","1573-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Mining and Knowledge Discovery","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1705.06125","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089537120","display_name":"Petr Ry\u0161av\u00fd","orcid":"https://orcid.org/0000-0002-6597-6616"},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Petr Ry\u0161av\u00fd","raw_affiliation_strings":["Department of Computer Science, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic","Dept. of Computer Science, Faculty of Electrical Engineering Czech Technical University in Prague, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]},{"raw_affiliation_string":"Dept. of Computer Science, Faculty of Electrical Engineering Czech Technical University in Prague, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062388770","display_name":"Filip \u017delezn\u00fd","orcid":"https://orcid.org/0000-0001-9780-3376"},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Filip \u017delezn\u00fd","raw_affiliation_strings":["Department of Computer Science, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic","Dept. of Computer Science, Faculty of Electrical Engineering Czech Technical University in Prague, Prague, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]},{"raw_affiliation_string":"Dept. of Computer Science, Faculty of Electrical Engineering Czech Technical University in Prague, Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5089537120"],"corresponding_institution_ids":["https://openalex.org/I44504214"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.00153912,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"33","issue":"1","first_page":"1","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9603000283241272,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7811814546585083},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7470769882202148},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7162532806396484},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6786106824874878},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6732466220855713},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5548673868179321},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.5346229672431946},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.509992241859436},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4707287549972534},{"id":"https://openalex.org/keywords/edit-distance","display_name":"Edit distance","score":0.429696261882782},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.41012465953826904},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3979733884334564},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33288177847862244},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3228432536125183},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25571632385253906}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7811814546585083},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7470769882202148},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7162532806396484},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6786106824874878},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6732466220855713},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5548673868179321},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.5346229672431946},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.509992241859436},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4707287549972534},{"id":"https://openalex.org/C44359876","wikidata":"https://www.wikidata.org/wiki/Q5338467","display_name":"Edit distance","level":2,"score":0.429696261882782},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.41012465953826904},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3979733884334564},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33288177847862244},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3228432536125183},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25571632385253906},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/s10618-018-0584-8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10618-018-0584-8","pdf_url":null,"source":{"id":"https://openalex.org/S121920818","display_name":"Data Mining and Knowledge Discovery","issn_l":"1384-5810","issn":["1384-5810","1573-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Mining and Knowledge Discovery","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:1705.06125","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1705.06125","pdf_url":"https://arxiv.org/pdf/1705.06125","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2616508114","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1705.06125v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1705.06125","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1705.06125","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1705.06125","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1705.06125","pdf_url":"https://arxiv.org/pdf/1705.06125","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2616508114.pdf","grobid_xml":"https://content.openalex.org/works/W2616508114.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1647671624","https://openalex.org/W1664995006","https://openalex.org/W1966822396","https://openalex.org/W1968363797","https://openalex.org/W1970026646","https://openalex.org/W1988827980","https://openalex.org/W2001496424","https://openalex.org/W2006075770","https://openalex.org/W2007807048","https://openalex.org/W2023911006","https://openalex.org/W2030644393","https://openalex.org/W2043481183","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2104549677","https://openalex.org/W2113075998","https://openalex.org/W2120358246","https://openalex.org/W2124572097","https://openalex.org/W2131581981","https://openalex.org/W2142167651","https://openalex.org/W2149616469","https://openalex.org/W2157539385","https://openalex.org/W2160969485","https://openalex.org/W2166162901","https://openalex.org/W2168909179","https://openalex.org/W2171475724","https://openalex.org/W2171810029","https://openalex.org/W2229908198","https://openalex.org/W2396849069","https://openalex.org/W2513140684","https://openalex.org/W2523724266","https://openalex.org/W2572194927","https://openalex.org/W2950150251"],"related_works":["https://openalex.org/W2523724266","https://openalex.org/W2963017196","https://openalex.org/W3098878596","https://openalex.org/W2765633183","https://openalex.org/W123743014","https://openalex.org/W2477323061","https://openalex.org/W2515698080","https://openalex.org/W2155844767","https://openalex.org/W2972605275","https://openalex.org/W2002964681","https://openalex.org/W1588529487","https://openalex.org/W2737931494","https://openalex.org/W2973120179","https://openalex.org/W2089453789","https://openalex.org/W1548108731","https://openalex.org/W2092464631","https://openalex.org/W2904847915","https://openalex.org/W2072780137","https://openalex.org/W2763485408","https://openalex.org/W2510906293"],"abstract_inverted_index":null,"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-21T08:13:44.787528","created_date":"2022-10-05T00:00:00"}
