{"id":"https://openalex.org/W2065087424","doi":"https://doi.org/10.1007/s10618-015-0413-2","title":"DRESS: dimensionality reduction for efficient sequence search","display_name":"DRESS: dimensionality reduction for efficient sequence search","publication_year":2015,"publication_date":"2015-03-20","ids":{"openalex":"https://openalex.org/W2065087424","doi":"https://doi.org/10.1007/s10618-015-0413-2","mag":"2065087424"},"language":"en","primary_location":{"id":"doi:10.1007/s10618-015-0413-2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10618-015-0413-2","pdf_url":null,"source":{"id":"https://openalex.org/S121920818","display_name":"Data Mining and Knowledge Discovery","issn_l":"1384-5810","issn":["1384-5810","1573-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Mining and Knowledge Discovery","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043054817","display_name":"Alexios Kotsifakos","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexios Kotsifakos","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026703937","display_name":"Alexandra Stefan","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandra Stefan","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025213339","display_name":"Vassilis Athitsos","orcid":"https://orcid.org/0000-0002-1281-6168"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vassilis Athitsos","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002203026","display_name":"Gautam Das","orcid":"https://orcid.org/0000-0002-4627-9065"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gautam Das","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Texas at Arlington, Arlington, TX, USA","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"[Department of Computer Science & Engineering, University of Texas at Arlington, Arlington, USA]","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044999523","display_name":"Panagiotis Papapetrou","orcid":"https://orcid.org/0000-0002-4632-4815"},"institutions":[{"id":"https://openalex.org/I161593684","display_name":"Stockholm University","ror":"https://ror.org/05f0yaq80","country_code":"SE","type":"education","lineage":["https://openalex.org/I161593684"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Panagiotis Papapetrou","raw_affiliation_strings":["Department of Computer and Systems Sciences, Stockholm University, Stockholm, Sweden","Department of Computer and Systems Sciences, Stockholm University , Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Systems Sciences, Stockholm University, Stockholm, Sweden","institution_ids":["https://openalex.org/I161593684"]},{"raw_affiliation_string":"Department of Computer and Systems Sciences, Stockholm University , Stockholm, Sweden","institution_ids":["https://openalex.org/I161593684"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5043054817"],"corresponding_institution_ids":["https://openalex.org/I189196454"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":null,"fwci":0.2968,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.61348973,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"29","issue":"5","first_page":"1280","last_page":"1311"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6737979650497437},{"id":"https://openalex.org/keywords/edit-distance","display_name":"Edit distance","score":0.6615206599235535},{"id":"https://openalex.org/keywords/range-query","display_name":"Range query (database)","score":0.6067089438438416},{"id":"https://openalex.org/keywords/nearest-neighbor-search","display_name":"Nearest neighbor search","score":0.5629307627677917},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.557322084903717},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5142671465873718},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5039348006248474},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.500598669052124},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.4749327301979065},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.4731380045413971},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.47020038962364197},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.4646318554878235},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4460747539997101},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.428943395614624},{"id":"https://openalex.org/keywords/query-optimization","display_name":"Query optimization","score":0.4263017773628235},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.41760846972465515},{"id":"https://openalex.org/keywords/approximate-string-matching","display_name":"Approximate string matching","score":0.4118348956108093},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3546598553657532},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34037452936172485},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.3297176957130432},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2657637596130371},{"id":"https://openalex.org/keywords/sargable","display_name":"Sargable","score":0.25695234537124634},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24322688579559326},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.23229891061782837},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.22073820233345032},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.2125091254711151}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6737979650497437},{"id":"https://openalex.org/C44359876","wikidata":"https://www.wikidata.org/wiki/Q5338467","display_name":"Edit distance","level":2,"score":0.6615206599235535},{"id":"https://openalex.org/C136736807","wikidata":"https://www.wikidata.org/wiki/Q818943","display_name":"Range query (database)","level":5,"score":0.6067089438438416},{"id":"https://openalex.org/C116738811","wikidata":"https://www.wikidata.org/wiki/Q608751","display_name":"Nearest neighbor search","level":2,"score":0.5629307627677917},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.557322084903717},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5142671465873718},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5039348006248474},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.500598669052124},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.4749327301979065},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.4731380045413971},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.47020038962364197},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.4646318554878235},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4460747539997101},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.428943395614624},{"id":"https://openalex.org/C157692150","wikidata":"https://www.wikidata.org/wiki/Q2919848","display_name":"Query optimization","level":2,"score":0.4263017773628235},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.41760846972465515},{"id":"https://openalex.org/C32610155","wikidata":"https://www.wikidata.org/wiki/Q1798621","display_name":"Approximate string matching","level":3,"score":0.4118348956108093},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3546598553657532},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34037452936172485},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.3297176957130432},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2657637596130371},{"id":"https://openalex.org/C192939062","wikidata":"https://www.wikidata.org/wiki/Q104840822","display_name":"Sargable","level":4,"score":0.25695234537124634},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24322688579559326},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.23229891061782837},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.22073820233345032},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.2125091254711151},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10618-015-0413-2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10618-015-0413-2","pdf_url":null,"source":{"id":"https://openalex.org/S121920818","display_name":"Data Mining and Knowledge Discovery","issn_l":"1384-5810","issn":["1384-5810","1573-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data Mining and Knowledge Discovery","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W125979907","https://openalex.org/W1523134890","https://openalex.org/W1981409766","https://openalex.org/W2022950967","https://openalex.org/W2037896692","https://openalex.org/W2039249321","https://openalex.org/W2042507562","https://openalex.org/W2045821558","https://openalex.org/W2048971142","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2093080729","https://openalex.org/W2096598900","https://openalex.org/W2100080493","https://openalex.org/W2103717317","https://openalex.org/W2108235229","https://openalex.org/W2110889574","https://openalex.org/W2112113834","https://openalex.org/W2112200469","https://openalex.org/W2115321097","https://openalex.org/W2119057313","https://openalex.org/W2123020735","https://openalex.org/W2124985265","https://openalex.org/W2131329986","https://openalex.org/W2136145671","https://openalex.org/W2139760555","https://openalex.org/W2142619120","https://openalex.org/W2144990395","https://openalex.org/W2153454206","https://openalex.org/W2154268145","https://openalex.org/W2154931799","https://openalex.org/W2158714788","https://openalex.org/W2161488606","https://openalex.org/W2167847032","https://openalex.org/W2169353508"],"related_works":["https://openalex.org/W2399644331","https://openalex.org/W52396946","https://openalex.org/W2405436873","https://openalex.org/W1604047596","https://openalex.org/W2482057383","https://openalex.org/W2187092961","https://openalex.org/W1593185626","https://openalex.org/W2050554337","https://openalex.org/W2151836590","https://openalex.org/W1998140328"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
