{"id":"https://openalex.org/W2087072039","doi":"https://doi.org/10.1007/s10601-007-9033-9","title":"DARN! A Weighted Constraint Solver for RNA Motif Localization","display_name":"DARN! A Weighted Constraint Solver for RNA Motif Localization","publication_year":2008,"publication_date":"2008-02-06","ids":{"openalex":"https://openalex.org/W2087072039","doi":"https://doi.org/10.1007/s10601-007-9033-9","mag":"2087072039"},"language":"en","primary_location":{"id":"doi:10.1007/s10601-007-9033-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10601-007-9033-9","pdf_url":null,"source":{"id":"https://openalex.org/S75534514","display_name":"Constraints","issn_l":"1383-7133","issn":["1383-7133","1572-9354"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Constraints","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014387206","display_name":"Matthias Zytnicki","orcid":"https://orcid.org/0000-0002-4895-8731"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Matthias Zytnicki","raw_affiliation_strings":["INRA-BIA, Chemin de Borde-Rouge, Castanet, France","INRA-BIA, Castanet, France"],"affiliations":[{"raw_affiliation_string":"INRA-BIA, Chemin de Borde-Rouge, Castanet, France","institution_ids":[]},{"raw_affiliation_string":"INRA-BIA, Castanet, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011956675","display_name":"Christine Gaspin","orcid":"https://orcid.org/0000-0003-0304-5186"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christine Gaspin","raw_affiliation_strings":["INRA-BIA, Chemin de Borde-Rouge, Castanet, France","INRA-BIA, Castanet, France"],"affiliations":[{"raw_affiliation_string":"INRA-BIA, Chemin de Borde-Rouge, Castanet, France","institution_ids":[]},{"raw_affiliation_string":"INRA-BIA, Castanet, France","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080878843","display_name":"Thomas Schiex","orcid":"https://orcid.org/0000-0001-6049-3415"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thomas Schiex","raw_affiliation_strings":["INRA-BIA, Chemin de Borde-Rouge, Castanet, France","INRA-BIA, Castanet, France"],"affiliations":[{"raw_affiliation_string":"INRA-BIA, Chemin de Borde-Rouge, Castanet, France","institution_ids":[]},{"raw_affiliation_string":"INRA-BIA, Castanet, France","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014387206"],"corresponding_institution_ids":[],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.968,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.74816696,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"13","issue":"1-2","first_page":"91","last_page":"109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.7848638296127319},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5499878525733948},{"id":"https://openalex.org/keywords/problem-solver","display_name":"Problem solver","score":0.5430343747138977},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5321463942527771},{"id":"https://openalex.org/keywords/solver","display_name":"Solver","score":0.45625433325767517},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4515128433704376},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4083535075187683},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2694050073623657},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.244255930185318},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2253941297531128},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.19233185052871704},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08791890740394592},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08036014437675476},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.07652631402015686}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.7848638296127319},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5499878525733948},{"id":"https://openalex.org/C3019612716","wikidata":"https://www.wikidata.org/wiki/Q730920","display_name":"Problem solver","level":2,"score":0.5430343747138977},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5321463942527771},{"id":"https://openalex.org/C2778770139","wikidata":"https://www.wikidata.org/wiki/Q1966904","display_name":"Solver","level":2,"score":0.45625433325767517},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4515128433704376},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4083535075187683},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2694050073623657},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.244255930185318},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2253941297531128},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.19233185052871704},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08791890740394592},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08036014437675476},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.07652631402015686},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s10601-007-9033-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10601-007-9033-9","pdf_url":null,"source":{"id":"https://openalex.org/S75534514","display_name":"Constraints","issn_l":"1383-7133","issn":["1383-7133","1572-9354"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Constraints","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.132.2672","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.132.2672","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ai.uwaterloo.ca/~vanbeek/Constraints/Papers/GaspinSZ08.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1515839227","https://openalex.org/W1548650523","https://openalex.org/W1574721051","https://openalex.org/W1969837282","https://openalex.org/W2011368877","https://openalex.org/W2011617423","https://openalex.org/W2024177760","https://openalex.org/W2039820890","https://openalex.org/W2042881722","https://openalex.org/W2043274817","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2080427769","https://openalex.org/W2105070391","https://openalex.org/W2134283755","https://openalex.org/W2152214314","https://openalex.org/W2753765968","https://openalex.org/W4210951666","https://openalex.org/W4242156070","https://openalex.org/W6633007324"],"related_works":["https://openalex.org/W2132874577","https://openalex.org/W2011621332","https://openalex.org/W2116898168","https://openalex.org/W1605093979","https://openalex.org/W2152572054","https://openalex.org/W2920969592","https://openalex.org/W2074269745","https://openalex.org/W2568362682","https://openalex.org/W1836984851","https://openalex.org/W2990609819"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
