{"id":"https://openalex.org/W2081293325","doi":"https://doi.org/10.1007/s10601-007-9032-x","title":"Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination","display_name":"Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination","publication_year":2008,"publication_date":"2008-04-05","ids":{"openalex":"https://openalex.org/W2081293325","doi":"https://doi.org/10.1007/s10601-007-9032-x","mag":"2081293325"},"language":"en","primary_location":{"id":"doi:10.1007/s10601-007-9032-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10601-007-9032-x","pdf_url":null,"source":{"id":"https://openalex.org/S75534514","display_name":"Constraints","issn_l":"1383-7133","issn":["1383-7133","1572-9354"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Constraints","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103135268","display_name":"Sebastian Will","orcid":"https://orcid.org/0000-0002-2376-9205"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Sebastian Will","raw_affiliation_strings":["Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 106, 79110, Freiburg, Germany","Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany 79110#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 106, 79110, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany 79110#TAB#","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031748489","display_name":"Anke Busch","orcid":"https://orcid.org/0000-0002-2232-1329"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anke Busch","raw_affiliation_strings":["Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 106, 79110, Freiburg, Germany","Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany 79110#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 106, 79110, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany 79110#TAB#","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017672883","display_name":"Rolf Backofen","orcid":"https://orcid.org/0000-0001-8231-3323"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rolf Backofen","raw_affiliation_strings":["Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 106, 79110, Freiburg, Germany","Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany 79110#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Georges-Koehler-Allee 106, 79110, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Bioinformatics Group, Institute of Computer Science, Albert-Ludwigs-University Freiburg, Freiburg, Germany 79110#TAB#","institution_ids":["https://openalex.org/I161046081"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5103135268"],"corresponding_institution_ids":["https://openalex.org/I161046081"],"apc_list":{"value":2290,"currency":"EUR","value_usd":2890},"apc_paid":null,"fwci":0.4149,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.64220251,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"13","issue":"1-2","first_page":"110","last_page":"129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6844741106033325},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.680101215839386},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5715451836585999},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5368192195892334},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5323216319084167},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5088384747505188},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.475685715675354},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4412873685359955},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37531888484954834},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3540218472480774},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12281149625778198},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1042364239692688},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08348914980888367}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6844741106033325},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.680101215839386},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5715451836585999},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5368192195892334},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5323216319084167},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5088384747505188},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.475685715675354},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4412873685359955},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37531888484954834},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3540218472480774},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12281149625778198},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1042364239692688},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08348914980888367},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s10601-007-9032-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10601-007-9032-x","pdf_url":null,"source":{"id":"https://openalex.org/S75534514","display_name":"Constraints","issn_l":"1383-7133","issn":["1383-7133","1572-9354"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Constraints","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.324.656","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.324.656","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.bioinf.uni-freiburg.de/Publications/Will:Busch:Backofen:_effic_sequen_align_side_const:Constraints2008.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.84.3858","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.84.3858","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ai.uwaterloo.ca/~vanbeek/Constraints/Papers/WillBB08.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W103975088","https://openalex.org/W1574721051","https://openalex.org/W1577028339","https://openalex.org/W1975168057","https://openalex.org/W1984675364","https://openalex.org/W2001583934","https://openalex.org/W2008288996","https://openalex.org/W2011368877","https://openalex.org/W2029634712","https://openalex.org/W2053197884","https://openalex.org/W2054698853","https://openalex.org/W2057835669","https://openalex.org/W2068448872","https://openalex.org/W2074231493","https://openalex.org/W2079277115","https://openalex.org/W2095145214","https://openalex.org/W2133783550","https://openalex.org/W2151994495","https://openalex.org/W2154055561","https://openalex.org/W2156525231","https://openalex.org/W2166745309","https://openalex.org/W2170157200","https://openalex.org/W2610552050","https://openalex.org/W2803927613"],"related_works":["https://openalex.org/W1482324242","https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2149492307","https://openalex.org/W1985408726","https://openalex.org/W1608334680"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}