{"id":"https://openalex.org/W4380883088","doi":"https://doi.org/10.1007/s10489-023-04618-0","title":"Using alignment-free and pattern mining methods for SARS-CoV-2 genome analysis","display_name":"Using alignment-free and pattern mining methods for SARS-CoV-2 genome analysis","publication_year":2023,"publication_date":"2023-06-16","ids":{"openalex":"https://openalex.org/W4380883088","doi":"https://doi.org/10.1007/s10489-023-04618-0"},"language":"en","primary_location":{"id":"doi:10.1007/s10489-023-04618-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10489-023-04618-0","pdf_url":null,"source":{"id":"https://openalex.org/S74726891","display_name":"Applied Intelligence","issn_l":"0924-669X","issn":["0924-669X","1573-7497"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Intelligence","raw_type":"journal-article"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025418453","display_name":"M. Saqib Nawaz","orcid":"https://orcid.org/0000-0001-9856-2885"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"M. Saqib Nawaz","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038682039","display_name":"Philippe Fournier\u2010Viger","orcid":"https://orcid.org/0000-0002-7680-9899"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Philippe Fournier-Viger","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-7680-9899","affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010665712","display_name":"Memoona Aslam","orcid":"https://orcid.org/0000-0001-9541-0448"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Memoona Aslam","raw_affiliation_strings":["Institute for Advanced Study, Shenzhen University, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Study, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100721804","display_name":"Wenjin Li","orcid":"https://orcid.org/0000-0002-3702-6314"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjin Li","raw_affiliation_strings":["Institute for Advanced Study, Shenzhen University, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Study, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076542236","display_name":"Yulin He","orcid":"https://orcid.org/0000-0002-3415-0686"},"institutions":[{"id":"https://openalex.org/I4210136793","display_name":"Peng Cheng Laboratory","ror":"https://ror.org/03qdqbt06","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210136793"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yulin He","raw_affiliation_strings":["Guangdong Laboratory of Artificial Intelligence and Digital Economy (SZ), 518107, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangdong Laboratory of Artificial Intelligence and Digital Economy (SZ), 518107, Shenzhen, China","institution_ids":["https://openalex.org/I4210136793"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007324907","display_name":"Xinzheng Niu","orcid":"https://orcid.org/0000-0003-4075-5355"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinzheng Niu","raw_affiliation_strings":["School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038682039"],"corresponding_institution_ids":["https://openalex.org/I180726961"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":null,"fwci":12.4187,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.99192957,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"53","issue":"19","first_page":"21920","last_page":"21943"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7912439107894897},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5979107618331909},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5959177017211914},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5462597608566284},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5298566222190857},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.5079694390296936},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.49165207147598267},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4807005524635315},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.480158269405365},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.450344979763031},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4284888803958893},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.41065773367881775},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32007408142089844},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2807721495628357},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2547544240951538},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25161537528038025},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.20620587468147278}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7912439107894897},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5979107618331909},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5959177017211914},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5462597608566284},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5298566222190857},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.5079694390296936},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.49165207147598267},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4807005524635315},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.480158269405365},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.450344979763031},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4284888803958893},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.41065773367881775},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32007408142089844},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2807721495628357},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2547544240951538},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25161537528038025},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.20620587468147278},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10489-023-04618-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10489-023-04618-0","pdf_url":null,"source":{"id":"https://openalex.org/S74726891","display_name":"Applied Intelligence","issn_l":"0924-669X","issn":["0924-669X","1573-7497"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.550000011920929,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W114461282","https://openalex.org/W138108058","https://openalex.org/W170728857","https://openalex.org/W1581231885","https://openalex.org/W1967843471","https://openalex.org/W1995106824","https://openalex.org/W2008386840","https://openalex.org/W2034337154","https://openalex.org/W2049482525","https://openalex.org/W2055043387","https://openalex.org/W2068383400","https://openalex.org/W2089649677","https://openalex.org/W2094890728","https://openalex.org/W2112971308","https://openalex.org/W2122468393","https://openalex.org/W2122962290","https://openalex.org/W2126642153","https://openalex.org/W2144221002","https://openalex.org/W2169240294","https://openalex.org/W2171963266","https://openalex.org/W2295894764","https://openalex.org/W2344088191","https://openalex.org/W2397829822","https://openalex.org/W2507635762","https://openalex.org/W2554298087","https://openalex.org/W2611554670","https://openalex.org/W2761430568","https://openalex.org/W2895222304","https://openalex.org/W2962807110","https://openalex.org/W2963607348","https://openalex.org/W2974285614","https://openalex.org/W3003217347","https://openalex.org/W3009906937","https://openalex.org/W3014725478","https://openalex.org/W3016636971","https://openalex.org/W3016673788","https://openalex.org/W3019119825","https://openalex.org/W3020188044","https://openalex.org/W3034021008","https://openalex.org/W3036179535","https://openalex.org/W3039828206","https://openalex.org/W3048678497","https://openalex.org/W3097720646","https://openalex.org/W3104810384","https://openalex.org/W3119527628","https://openalex.org/W3120257183","https://openalex.org/W3120505451","https://openalex.org/W3130153679","https://openalex.org/W3136933888","https://openalex.org/W3137510455","https://openalex.org/W3138497854","https://openalex.org/W3150565720","https://openalex.org/W3152817622","https://openalex.org/W3184886727","https://openalex.org/W3185126335","https://openalex.org/W3188100398","https://openalex.org/W3198013532","https://openalex.org/W3201071178","https://openalex.org/W3208014559","https://openalex.org/W3208213514","https://openalex.org/W4224264605","https://openalex.org/W4313452391"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2111937814","https://openalex.org/W2162923930","https://openalex.org/W1482324242","https://openalex.org/W2133116680","https://openalex.org/W2091678889","https://openalex.org/W2029514038","https://openalex.org/W2149492307","https://openalex.org/W1985408726","https://openalex.org/W1525517788"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2025-10-10T00:00:00"}
