{"id":"https://openalex.org/W3162048269","doi":"https://doi.org/10.1007/s10489-021-02454-8","title":"KG-DTI: a knowledge graph based deep learning method for drug-target interaction predictions and Alzheimer\u2019s disease drug repositions","display_name":"KG-DTI: a knowledge graph based deep learning method for drug-target interaction predictions and Alzheimer\u2019s disease drug repositions","publication_year":2021,"publication_date":"2021-05-12","ids":{"openalex":"https://openalex.org/W3162048269","doi":"https://doi.org/10.1007/s10489-021-02454-8","mag":"3162048269"},"language":"en","primary_location":{"id":"doi:10.1007/s10489-021-02454-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10489-021-02454-8","pdf_url":null,"source":{"id":"https://openalex.org/S74726891","display_name":"Applied Intelligence","issn_l":"0924-669X","issn":["0924-669X","1573-7497"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1007/s10489-021-02454-8","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100389987","display_name":"Shudong Wang","orcid":"https://orcid.org/0000-0003-4360-6718"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shudong Wang","raw_affiliation_strings":["College of Computer Science and Technology, China University of Petroleum, Qingdao, 266580, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, 266580, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101518428","display_name":"Zhenzhen Du","orcid":"https://orcid.org/0000-0001-8567-7966"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenzhen Du","raw_affiliation_strings":["College of Computer Science and Technology, China University of Petroleum, Qingdao, 266580, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, 266580, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101459067","display_name":"Mao Ding","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103957","display_name":"Second Hospital of Shandong University","ror":"https://ror.org/01fd86n56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210103957"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mao Ding","raw_affiliation_strings":["Department of Neurology Medicine, The Second Hospital, Cheeloo College of Medicine, Shandong University, Jinan, 250033, China"],"affiliations":[{"raw_affiliation_string":"Department of Neurology Medicine, The Second Hospital, Cheeloo College of Medicine, Shandong University, Jinan, 250033, China","institution_ids":["https://openalex.org/I4210103957"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049425478","display_name":"Alfonso Rodr\u00edguez\u2010Pat\u00f3n","orcid":"https://orcid.org/0000-0001-7289-2114"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Rodriguez-Paton","raw_affiliation_strings":["Department of Artificial Intelligence, Faculty of Computer Science, Polytechnical University of Madrid, Campus de Montegancedo, Boadilla del Monte, 28660, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Artificial Intelligence, Faculty of Computer Science, Polytechnical University of Madrid, Campus de Montegancedo, Boadilla del Monte, 28660, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006420025","display_name":"Tao Song","orcid":"https://orcid.org/0000-0002-0130-3340"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["CN","ES"],"is_corresponding":false,"raw_author_name":"Tao Song","raw_affiliation_strings":["College of Computer Science and Technology, China University of Petroleum, Qingdao, 266580, China","Department of Artificial Intelligence, Faculty of Computer Science, Polytechnical University of Madrid, Campus de Montegancedo, Boadilla del Monte, 28660, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, 266580, China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"Department of Artificial Intelligence, Faculty of Computer Science, Polytechnical University of Madrid, Campus de Montegancedo, Boadilla del Monte, 28660, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101459067"],"corresponding_institution_ids":["https://openalex.org/I4210103957"],"apc_list":{"value":2390,"currency":"EUR","value_usd":2990},"apc_paid":{"value":2390,"currency":"EUR","value_usd":2990},"fwci":7.3913,"has_fulltext":false,"cited_by_count":68,"citation_normalized_percentile":{"value":0.97621296,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"52","issue":"1","first_page":"846","last_page":"857"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8062765002250671},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5817157030105591},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48497891426086426},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4694373607635498},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.45985111594200134},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4134672284126282},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15016764402389526},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.14449885487556458},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.10467475652694702},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.06780636310577393}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8062765002250671},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5817157030105591},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48497891426086426},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4694373607635498},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.45985111594200134},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4134672284126282},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15016764402389526},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.14449885487556458},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.10467475652694702},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.06780636310577393}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10489-021-02454-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10489-021-02454-8","pdf_url":null,"source":{"id":"https://openalex.org/S74726891","display_name":"Applied Intelligence","issn_l":"0924-669X","issn":["0924-669X","1573-7497"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Intelligence","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1007/s10489-021-02454-8","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10489-021-02454-8","pdf_url":null,"source":{"id":"https://openalex.org/S74726891","display_name":"Applied Intelligence","issn_l":"0924-669X","issn":["0924-669X","1573-7497"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Intelligence","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5299999713897705,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G4812458088","display_name":null,"funder_award_id":"18CX02152A, 19CX05003A-6","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4941540809","display_name":null,"funder_award_id":"No. ISEE2018PY05","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G75767497","display_name":null,"funder_award_id":"Grant Nos. 61873280, 61672033, 61672248, 61972416","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8656402617","display_name":null,"funder_award_id":"No. ZR2019MF012","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W205829674","https://openalex.org/W324102958","https://openalex.org/W808945406","https://openalex.org/W1533230146","https://openalex.org/W1665214252","https://openalex.org/W2085732173","https://openalex.org/W2097117768","https://openalex.org/W2117893855","https://openalex.org/W2127795553","https://openalex.org/W2132194615","https://openalex.org/W2146502635","https://openalex.org/W2183341477","https://openalex.org/W2274287116","https://openalex.org/W2586637063","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2771798633","https://openalex.org/W2791560836","https://openalex.org/W2911964244","https://openalex.org/W2946555518","https://openalex.org/W2949117887","https://openalex.org/W2963432357","https://openalex.org/W2966787092","https://openalex.org/W2974531988","https://openalex.org/W2992586577","https://openalex.org/W3014191454","https://openalex.org/W3035011799","https://openalex.org/W3041467169","https://openalex.org/W3046704160","https://openalex.org/W3098189759","https://openalex.org/W3111065871","https://openalex.org/W3125890999","https://openalex.org/W3128501771","https://openalex.org/W3130189352"],"related_works":["https://openalex.org/W4206379684","https://openalex.org/W2366105490","https://openalex.org/W2580680567","https://openalex.org/W2606076248","https://openalex.org/W4285170202","https://openalex.org/W114270996","https://openalex.org/W4249200654","https://openalex.org/W2396656278","https://openalex.org/W3011011760","https://openalex.org/W2407625558"],"abstract_inverted_index":{"Drug":[0],"repositioning,":[1],"which":[2,70,175],"recommends":[3],"approved":[4],"drugs":[5,124,145],"to":[6,63,122,125,157,183],"potential":[7,181],"targets":[8],"by":[9,54,73,102,105,108,112,129],"predicting":[10],"drug-target":[11,50,67],"interactions":[12],"(DTIs),":[13],"can":[14,169],"save":[15],"the":[16,20,141,164],"cost":[17],"and":[18,91,110],"shorten":[19],"period":[21],"of":[22,47,66,140],"drug":[23,168,182],"development.":[24],"In":[25,117],"this":[26],"work,":[27],"we":[28],"propose":[29],"a":[30,44,74],"novel":[31],"knowledge":[32,45],"graph":[33,46],"based":[34],"deep":[35],"learning":[36],"method,":[37],"named":[38],"KG-DTI,":[39],"for":[40,79],"DTIs":[41,80],"predictions.":[42],"Specifically,":[43],"29,607":[48],"positive":[49,90],"pairs":[51,68],"is":[52,61,71,95,120,136],"constructed":[53],"DistMult":[55],"embedding":[56],"strategy.":[57],"A":[58],"Conv-Conv":[59],"module":[60],"proposed":[62],"extract":[64],"features":[65],"(DTPs),":[69],"followed":[72],"fully":[75],"connected":[76],"neural":[77],"network":[78],"calculation.":[81],"Data":[82],"experiments":[83],"are":[84],"conducted":[85],"on":[86],"randomly":[87],"chosen":[88],"11,840":[89],"negative":[92],"samples.":[93],"It":[94],"obtained":[96],"that":[97,138,163],"KG-DTI":[98,119],"achieves":[99],"average":[100],"ACC":[101],"88.0%,":[103],"F1-Score":[104],"87.7%,":[106],"AUROC":[107],"94.3%":[109],"AUPR":[111],"95%":[113],"in":[114,149,179],"five-fold":[115],"cross-validation.":[116],"practice,":[118],"applied":[121],"reposition":[123],"Alzheimer\u2019s":[126],"disease":[127],"(AD)":[128],"Apolipoprotein":[130,172],"E":[131,173],"target.":[132],"As":[133],"results,":[134],"it":[135],"found":[137],"seven":[139],"top":[142,165],"ten":[143],"recommended":[144,167],"have":[146],"been":[147],"used":[148],"clinic":[150],"practice":[151],"or":[152],"with":[153,171],"literature":[154],"supported":[155],"useful":[156],"AD.":[158],"Ligand-target":[159],"docking":[160],"results":[161],"show":[162],"one":[166],"dock":[170],"significantly,":[174],"gives":[176],"vital":[177],"hints":[178],"repositioning":[180],"AD":[184],"treatment.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
