{"id":"https://openalex.org/W4402808474","doi":"https://doi.org/10.1007/s10462-024-10918-9","title":"Graph pooling in graph neural networks: methods and their applications in omics studies","display_name":"Graph pooling in graph neural networks: methods and their applications in omics studies","publication_year":2024,"publication_date":"2024-09-16","ids":{"openalex":"https://openalex.org/W4402808474","doi":"https://doi.org/10.1007/s10462-024-10918-9"},"language":"en","primary_location":{"id":"doi:10.1007/s10462-024-10918-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10462-024-10918-9","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10462-024-10918-9.pdf","source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10462-024-10918-9.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100322699","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-4751-0708"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024295908","display_name":"Wenju Hou","orcid":"https://orcid.org/0000-0001-9247-8324"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenju Hou","raw_affiliation_strings":["Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057845577","display_name":"Nan Sheng","orcid":"https://orcid.org/0000-0002-0306-9009"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Nan Sheng","raw_affiliation_strings":["Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100625270","display_name":"Ziqi Zhao","orcid":"https://orcid.org/0000-0001-9300-8172"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziqi Zhao","raw_affiliation_strings":["College of Software, Jilin University, Changchun, 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Software, Jilin University, Changchun, 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056960939","display_name":"Jialin Liu","orcid":"https://orcid.org/0000-0001-9227-6941"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jialin Liu","raw_affiliation_strings":["Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101463922","display_name":"Lan Huang","orcid":"https://orcid.org/0000-0003-3233-3777"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lan Huang","raw_affiliation_strings":["Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering, Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, 130012, China","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080641496","display_name":"Juexin Wang","orcid":"https://orcid.org/0000-0002-2260-4310"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Juexin Wang","raw_affiliation_strings":["Department of Biomedical Engineering and Informatics, Luddy School of Informatics, Computing, and Engineering, Indiana University Indianapolis, Indianapolis, IN, 46202, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and Informatics, Luddy School of Informatics, Computing, and Engineering, Indiana University Indianapolis, Indianapolis, IN, 46202, USA","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5080641496","https://openalex.org/A5101463922"],"corresponding_institution_ids":["https://openalex.org/I194450716","https://openalex.org/I55769427"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":3090,"currency":"USD","value_usd":3090},"fwci":3.7277,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.94503569,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"57","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7380690574645996},{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.64268958568573},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5233365893363953},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4095747470855713},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.341625839471817},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.24895921349525452}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7380690574645996},{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.64268958568573},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5233365893363953},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4095747470855713},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.341625839471817},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.24895921349525452}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s10462-024-10918-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10462-024-10918-9","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10462-024-10918-9.pdf","source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/55950","is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/55950","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publisher","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1007/s10462-024-10918-9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10462-024-10918-9","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10462-024-10918-9.pdf","source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1575221034","display_name":null,"funder_award_id":"20210504003GH","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2241915452","display_name":"\u878d\u5408\u591a\u7ec4\u5b66\u6570\u636e\u7684\u80f0\u817a\u764c\u4f53\u6db2\u6807\u5fd7\u7269\u7cbe\u51c6\u6316\u6398\u4e0e\u673a\u7406\u7814\u7a76","funder_award_id":"62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6867991832","display_name":null,"funder_award_id":"20220508125RC","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G928990299","display_name":null,"funder_award_id":"20230201065GX","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322174","display_name":"People's Government of Jilin Province","ror":"https://ror.org/02fzqav45"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4402808474.pdf"},"referenced_works_count":201,"referenced_works":["https://openalex.org/W1492230849","https://openalex.org/W1501565421","https://openalex.org/W1901129140","https://openalex.org/W1977340881","https://openalex.org/W1981276685","https://openalex.org/W2008857988","https://openalex.org/W2025167103","https://openalex.org/W2034618876","https://openalex.org/W2056562706","https://openalex.org/W2092750499","https://openalex.org/W2099438806","https://openalex.org/W2135957668","https://openalex.org/W2144000913","https://openalex.org/W2194775991","https://openalex.org/W2508622936","https://openalex.org/W2558460151","https://openalex.org/W2558748708","https://openalex.org/W2559655401","https://openalex.org/W2594183968","https://openalex.org/W2606202972","https://openalex.org/W2768308213","https://openalex.org/W2788919350","https://openalex.org/W2798598284","https://openalex.org/W2809343047","https://openalex.org/W2885408128","https://openalex.org/W2893880892","https://openalex.org/W2907101105","https://openalex.org/W2907492528","https://openalex.org/W2913015533","https://openalex.org/W2914721378","https://openalex.org/W2921554869","https://openalex.org/W2943927267","https://openalex.org/W2955793676","https://openalex.org/W2962810718","https://openalex.org/W2963017945","https://openalex.org/W2963066159","https://openalex.org/W2963084622","https://openalex.org/W2963555845","https://openalex.org/W2964234453","https://openalex.org/W2966445777","https://openalex.org/W2977768120","https://openalex.org/W2978484973","https://openalex.org/W2979086518","https://openalex.org/W2979638141","https://openalex.org/W2981898874","https://openalex.org/W2983288276","https://openalex.org/W2985111225","https://openalex.org/W2988856610","https://openalex.org/W2990049382","https://openalex.org/W2990138404","https://openalex.org/W2997785591","https://openalex.org/W2997997679","https://openalex.org/W2999044305","https://openalex.org/W3003393086","https://openalex.org/W3004423099","https://openalex.org/W3009499476","https://openalex.org/W3011667710","https://openalex.org/W3013085930","https://openalex.org/W3015047409","https://openalex.org/W3020930839","https://openalex.org/W3028078009","https://openalex.org/W3034090344","https://openalex.org/W3034534840","https://openalex.org/W3034618665","https://openalex.org/W3036016037","https://openalex.org/W3036962145","https://openalex.org/W3037732309","https://openalex.org/W3042024476","https://openalex.org/W3046002895","https://openalex.org/W3047391881","https://openalex.org/W3080667745","https://openalex.org/W3086516305","https://openalex.org/W3087644100","https://openalex.org/W3091336992","https://openalex.org/W3095609162","https://openalex.org/W3095716988","https://openalex.org/W3096934581","https://openalex.org/W3101369110","https://openalex.org/W3109949289","https://openalex.org/W3110736101","https://openalex.org/W3111787430","https://openalex.org/W3113037084","https://openalex.org/W3114160010","https://openalex.org/W3114303065","https://openalex.org/W3121756359","https://openalex.org/W3125132074","https://openalex.org/W3127510653","https://openalex.org/W3127647682","https://openalex.org/W3127690492","https://openalex.org/W3128129382","https://openalex.org/W3133653953","https://openalex.org/W3133780103","https://openalex.org/W3134138371","https://openalex.org/W3135958006","https://openalex.org/W3138479716","https://openalex.org/W3140330522","https://openalex.org/W3145608311","https://openalex.org/W3152893301","https://openalex.org/W3153673236","https://openalex.org/W3154497962","https://openalex.org/W3156414040","https://openalex.org/W3156823866","https://openalex.org/W3156998432","https://openalex.org/W3158436079","https://openalex.org/W3159799347","https://openalex.org/W3160922702","https://openalex.org/W3162275167","https://openalex.org/W3164046276","https://openalex.org/W3164338400","https://openalex.org/W3164766680","https://openalex.org/W3167460727","https://openalex.org/W3167575787","https://openalex.org/W3173856251","https://openalex.org/W3177098077","https://openalex.org/W3177828909","https://openalex.org/W3180540559","https://openalex.org/W3183241772","https://openalex.org/W3183761761","https://openalex.org/W3183845133","https://openalex.org/W3184900565","https://openalex.org/W3186880433","https://openalex.org/W3188579603","https://openalex.org/W3188927595","https://openalex.org/W3195040486","https://openalex.org/W3199008037","https://openalex.org/W3199999577","https://openalex.org/W3200174181","https://openalex.org/W3200997335","https://openalex.org/W3203099692","https://openalex.org/W3203246084","https://openalex.org/W3206568895","https://openalex.org/W3209367260","https://openalex.org/W3214112664","https://openalex.org/W3214532913","https://openalex.org/W4200139236","https://openalex.org/W4200276571","https://openalex.org/W4200431568","https://openalex.org/W4206402984","https://openalex.org/W4206776774","https://openalex.org/W4210320607","https://openalex.org/W4210322009","https://openalex.org/W4213426032","https://openalex.org/W4213449432","https://openalex.org/W4220892969","https://openalex.org/W4220952154","https://openalex.org/W4225604175","https://openalex.org/W4225662065","https://openalex.org/W4226116653","https://openalex.org/W4226218349","https://openalex.org/W4280589929","https://openalex.org/W4282821489","https://openalex.org/W4282827695","https://openalex.org/W4283716944","https://openalex.org/W4285116915","https://openalex.org/W4285590361","https://openalex.org/W4285818445","https://openalex.org/W4288781464","https://openalex.org/W4289110734","https://openalex.org/W4290998851","https://openalex.org/W4291338543","https://openalex.org/W4296780664","https://openalex.org/W4296821948","https://openalex.org/W4297382430","https://openalex.org/W4304479925","https://openalex.org/W4306316904","https://openalex.org/W4306931596","https://openalex.org/W4309096516","https://openalex.org/W4309862248","https://openalex.org/W4310273071","https://openalex.org/W4312106615","https://openalex.org/W4313406530","https://openalex.org/W4315434793","https://openalex.org/W4317437724","https://openalex.org/W4317703013","https://openalex.org/W4319216324","https://openalex.org/W4321004126","https://openalex.org/W4327652705","https://openalex.org/W4328008037","https://openalex.org/W4376113093","https://openalex.org/W4376643505","https://openalex.org/W4381613464","https://openalex.org/W4382239150","https://openalex.org/W4384558687","https://openalex.org/W4384920712","https://openalex.org/W4385475774","https://openalex.org/W4385764404","https://openalex.org/W4386401977","https://openalex.org/W4386702974","https://openalex.org/W4387068129","https://openalex.org/W4387701164","https://openalex.org/W4388563003","https://openalex.org/W4389210152","https://openalex.org/W4390528915","https://openalex.org/W4390663777","https://openalex.org/W4390881001","https://openalex.org/W4392168151","https://openalex.org/W4392853096","https://openalex.org/W4393147025","https://openalex.org/W4394881579","https://openalex.org/W4400140646","https://openalex.org/W4400524696"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Graph":[0],"neural":[1,9],"networks":[2,10],"(GNNs)":[3],"process":[4],"the":[5,31,49,63,89,100,104,115,142,187],"graph-structured":[6],"data":[7],"using":[8],"and":[11,37,52,70,94,98,131,154,175,181,205,219,233],"have":[12,24],"proven":[13],"successful":[14],"in":[15,74,166,195,213,235],"various":[16],"graph":[17,21,46,56,65,85,108,120,145,163,190,217],"processing":[18],"tasks.":[19],"Currently,":[20],"pooling":[22,66,86,96,121,146,164,191],"operators":[23,67,165,192],"emerged":[25],"as":[26,223,225],"crucial":[27],"components":[28],"that":[29,139],"bridge":[30],"gap":[32],"between":[33],"node":[34,43],"representation":[35],"learning":[36,215],"diverse":[38],"graph-level":[39],"tasks":[40],"by":[41,229],"transforming":[42],"representations":[44],"into":[45],"representations.":[47],"Given":[48],"rapid":[50],"growth":[51],"widespread":[53],"adoption":[54],"of":[55,83,107,144,162,170,189],"pooling,":[57,109],"this":[58],"review":[59,209],"aims":[60],"to":[61],"summarize":[62,159],"existing":[64,84],"for":[68,91,99,119,178],"GNNs":[69],"their":[71],"representative":[72],"applications":[73,161],"omics.":[75],"Specifically,":[76],"we":[77,113,158,185],"first":[78,101],"present":[79],"a":[80,200,236],"comprehensive":[81],"taxonomy":[82],"algorithms,":[87],"expanding":[88],"categorization":[90],"both":[92],"global":[93],"hierarchical":[95],"operators,":[97,122,147],"time":[102],"reviewing":[103],"inverse":[105],"operation":[106],"named":[110],"unpooling.":[111],"Next,":[112],"describe":[114],"general":[116],"evaluation":[117],"framework":[118],"encompassing":[123],"three":[124],"fundamental":[125],"aspects:":[126],"experimental":[127],"setup,":[128],"ablation":[129],"analysis,":[130],"model":[132,206],"interpretation.":[133],"We":[134],"also":[135],"discuss":[136],"open":[137],"issues":[138],"significantly":[140],"influence":[141],"design":[143],"including":[148,168],"complexity,":[149],"connectivity,":[150],"adaptability,":[151],"additional":[152],"loss,":[153],"attention":[155],"mechanisms.":[156],"Finally,":[157],"bioinformatics":[160],"omics,":[167],"graphs":[169],"gene":[171],"interaction,":[172],"medical":[173],"images,":[174],"protein":[176],"structures":[177],"drug":[179],"discovery":[180],"disease":[182],"diagnosis.":[183],"Furthermore,":[184],"showcase":[186],"impact":[188],"on":[193,202],"research":[194],"specific":[196],"real-world":[197],"domains,":[198],"with":[199],"focus":[201],"prediction":[203],"performance":[204],"interpretability.":[207],"This":[208],"provides":[210],"methodological":[211],"insights":[212],"machine":[214],"based":[216],"modeling":[218],"related":[220,231],"omics":[221],"research,":[222],"well":[224],"an":[226],"ongoing":[227],"resource":[228],"gathering":[230],"papers":[232],"code":[234],"dedicated":[237],"GitHub":[238],"repository":[239],"(":[240],"https://github.com/Hou-WJ/Graph-Pooling-Operators-and-Bioinformatics-Applications":[241],").":[242]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}