{"id":"https://openalex.org/W4391782448","doi":"https://doi.org/10.1007/s10462-023-10669-z","title":"A review on graph neural networks for predicting synergistic drug combinations","display_name":"A review on graph neural networks for predicting synergistic drug combinations","publication_year":2024,"publication_date":"2024-02-13","ids":{"openalex":"https://openalex.org/W4391782448","doi":"https://doi.org/10.1007/s10462-023-10669-z"},"language":"en","primary_location":{"id":"doi:10.1007/s10462-023-10669-z","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10462-023-10669-z","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10462-023-10669-z.pdf","source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},"type":"review","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007/s10462-023-10669-z.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031336038","display_name":"Milad Besharatifard","orcid":"https://orcid.org/0000-0001-9829-6396"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Milad Besharatifard","raw_affiliation_strings":["Biomedical AI Laboratory (Vafaee Lab), Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Biomedical AI Laboratory (Vafaee Lab), Sydney, Australia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090363651","display_name":"Fatemeh Vafaee","orcid":"https://orcid.org/0000-0002-7521-2417"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210099464","display_name":"Ecogenomics (Japan)","ror":"https://ror.org/00hbq5j06","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210099464"]}],"countries":["AU","JP"],"is_corresponding":true,"raw_author_name":"Fatemeh Vafaee","raw_affiliation_strings":["Biomedical AI Laboratory (Vafaee Lab), Sydney, Australia","OmniOmics Pty Ltd, Sydney, Australia","School of Biotechnology and Biomolecular Sciences, University of New South Wales (UNSW), Sydney, Australia","UNSW Data Science Hub, University of New South Wales (UNSW), Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Biomedical AI Laboratory (Vafaee Lab), Sydney, Australia","institution_ids":[]},{"raw_affiliation_string":"OmniOmics Pty Ltd, Sydney, Australia","institution_ids":["https://openalex.org/I4210099464"]},{"raw_affiliation_string":"School of Biotechnology and Biomolecular Sciences, University of New South Wales (UNSW), Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"UNSW Data Science Hub, University of New South Wales (UNSW), Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5090363651"],"corresponding_institution_ids":["https://openalex.org/I31746571","https://openalex.org/I4210099464"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":{"value":2490,"currency":"EUR","value_usd":3090},"fwci":12.6194,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.99045837,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"57","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9350000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12023","display_name":"Cholinesterase and Neurodegenerative Diseases","score":0.9228000044822693,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7110419273376465},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5008761882781982},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.46256881952285767},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4517747759819031},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4006364643573761},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.1893109679222107},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.12575435638427734}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7110419273376465},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5008761882781982},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.46256881952285767},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4517747759819031},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4006364643573761},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.1893109679222107},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.12575435638427734}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10462-023-10669-z","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10462-023-10669-z","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10462-023-10669-z.pdf","source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1007/s10462-023-10669-z","is_oa":true,"landing_page_url":"https://doi.org/10.1007/s10462-023-10669-z","pdf_url":"https://link.springer.com/content/pdf/10.1007/s10462-023-10669-z.pdf","source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8100000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320965","display_name":"University of New South Wales","ror":"https://ror.org/03r8z3t63"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4391782448.pdf"},"referenced_works_count":103,"referenced_works":["https://openalex.org/W1696775091","https://openalex.org/W1840268501","https://openalex.org/W1975455559","https://openalex.org/W1975728616","https://openalex.org/W1993595811","https://openalex.org/W2115270272","https://openalex.org/W2148143831","https://openalex.org/W2155626151","https://openalex.org/W2161756110","https://openalex.org/W2227583040","https://openalex.org/W2299417213","https://openalex.org/W2346803539","https://openalex.org/W2405887519","https://openalex.org/W2600452401","https://openalex.org/W2608863179","https://openalex.org/W2610860012","https://openalex.org/W2617974048","https://openalex.org/W2775061087","https://openalex.org/W2788684488","https://openalex.org/W2797260454","https://openalex.org/W2806328734","https://openalex.org/W2903942159","https://openalex.org/W2911286998","https://openalex.org/W2913447635","https://openalex.org/W2920837834","https://openalex.org/W2922229918","https://openalex.org/W2948035163","https://openalex.org/W2950860419","https://openalex.org/W2951449549","https://openalex.org/W2955205099","https://openalex.org/W2962711740","https://openalex.org/W2973796265","https://openalex.org/W2991423617","https://openalex.org/W3006386963","https://openalex.org/W3014482292","https://openalex.org/W3037178617","https://openalex.org/W3043595751","https://openalex.org/W3044927477","https://openalex.org/W3086194977","https://openalex.org/W3087257704","https://openalex.org/W3089843526","https://openalex.org/W3096561213","https://openalex.org/W3102269903","https://openalex.org/W3103472792","https://openalex.org/W3106154945","https://openalex.org/W3110933132","https://openalex.org/W3112541288","https://openalex.org/W3116202926","https://openalex.org/W3120618935","https://openalex.org/W3127930610","https://openalex.org/W3140330522","https://openalex.org/W3152893301","https://openalex.org/W3164087725","https://openalex.org/W3172530361","https://openalex.org/W3174291985","https://openalex.org/W3175449989","https://openalex.org/W3176120402","https://openalex.org/W3177828909","https://openalex.org/W3182563989","https://openalex.org/W3183139760","https://openalex.org/W3186475033","https://openalex.org/W3192134500","https://openalex.org/W3192425214","https://openalex.org/W3195831412","https://openalex.org/W3196304395","https://openalex.org/W3199618438","https://openalex.org/W3203908308","https://openalex.org/W3208676633","https://openalex.org/W4205431556","https://openalex.org/W4206078729","https://openalex.org/W4206201713","https://openalex.org/W4206718607","https://openalex.org/W4212799760","https://openalex.org/W4214940877","https://openalex.org/W4220754967","https://openalex.org/W4224319012","https://openalex.org/W4225596872","https://openalex.org/W4280589597","https://openalex.org/W4283209458","https://openalex.org/W4289315841","https://openalex.org/W4292121834","https://openalex.org/W4292438737","https://openalex.org/W4293214728","https://openalex.org/W4296907511","https://openalex.org/W4297227089","https://openalex.org/W4297733535","https://openalex.org/W4299365274","https://openalex.org/W4310460484","https://openalex.org/W4312114349","https://openalex.org/W4312114892","https://openalex.org/W4312264005","https://openalex.org/W4313525591","https://openalex.org/W4320709036","https://openalex.org/W4322614756","https://openalex.org/W4323031630","https://openalex.org/W4328048216","https://openalex.org/W4361008516","https://openalex.org/W4367673946","https://openalex.org/W4368356123","https://openalex.org/W4378953498","https://openalex.org/W4380743003","https://openalex.org/W4385491737","https://openalex.org/W4387440394"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3209574120","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Abstract":[0],"Combinational":[1],"therapies":[2],"with":[3],"synergistic":[4,19],"effects":[5],"provide":[6,102],"a":[7,29,103],"powerful":[8],"treatment":[9],"strategy":[10],"for":[11,111,135],"tackling":[12],"complex":[13,83],"diseases,":[14],"particularly":[15],"malignancies.":[16],"Discovering":[17],"these":[18],"combinations,":[20,115],"often":[21],"involving":[22],"various":[23,107],"compounds":[24],"and":[25,42,48,92,119,124,139],"structures,":[26],"necessitates":[27],"exploring":[28],"vast":[30],"array":[31],"of":[32,106,121,142,167],"compound":[33],"pairings.":[34],"However,":[35],"practical":[36],"constraints":[37],"such":[38],"as":[39,86,145],"cost,":[40],"feasibility,":[41],"complexity":[43],"hinder":[44],"exhaustive":[45],"in":[46,49,62,74],"vivo":[47],"vitro":[50],"experimentation.":[51],"In":[52],"recent":[53],"years,":[54],"machine":[55],"learning":[56],"methods":[57],"have":[58,70],"made":[59],"significant":[60],"inroads":[61],"pharmacology.":[63],"Among":[64],"these,":[65],"Graph":[66],"Neural":[67],"Networks":[68],"(GNNs)":[69],"gained":[71],"increasing":[72],"attention":[73],"drug":[75,114,136,153],"discovery":[76],"due":[77],"to":[78,81,101,159],"their":[79,126],"ability":[80],"represent":[82],"molecular":[84],"structures":[85],"networks,":[87],"capture":[88],"vital":[89],"structural":[90],"information,":[91],"seamlessly":[93],"handle":[94],"diverse":[95],"data":[96],"types.":[97],"This":[98],"review":[99,157],"aims":[100,158],"comprehensive":[104],"overview":[105],"GNN":[108],"models":[109],"developed":[110],"predicting":[112],"effective":[113],"examining":[116],"the":[117,132,140,150,164],"limitations":[118],"strengths":[120],"different":[122],"models,":[123],"comparing":[125],"predictive":[127,146],"performance.":[128],"Additionally,":[129],"we":[130],"discuss":[131],"datasets":[133],"used":[134],"synergism":[137],"prediction":[138],"extraction":[141],"drug-related":[143],"information":[144],"features.":[147],"By":[148],"summarizing":[149],"state-of-the-art":[151],"GNN-driven":[152],"combination":[154],"prediction,":[155],"this":[156],"offer":[160],"valuable":[161],"insights":[162],"into":[163],"promising":[165],"field":[166],"computational":[168],"pharmacotherapy.":[169]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":5}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2025-10-10T00:00:00"}
