{"id":"https://openalex.org/W4312059150","doi":"https://doi.org/10.1007/s10462-022-10357-4","title":"Fotomics: fourier transform-based omics imagification for deep learning-based cell-identity mapping using single-cell omics profiles","display_name":"Fotomics: fourier transform-based omics imagification for deep learning-based cell-identity mapping using single-cell omics profiles","publication_year":2022,"publication_date":"2022-12-09","ids":{"openalex":"https://openalex.org/W4312059150","doi":"https://doi.org/10.1007/s10462-022-10357-4"},"language":"en","primary_location":{"id":"doi:10.1007/s10462-022-10357-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10462-022-10357-4","pdf_url":null,"source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044200395","display_name":"Seid Miad Zandavi","orcid":"https://orcid.org/0000-0003-3015-5962"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]},{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Seid Miad Zandavi","raw_affiliation_strings":["Department of Pediatrics, Harvard Medical School, Boston, MA, USA","Division of Genetics and Genomics, Boston Children\u2019s Hospital, Boston, MA, USA","OmniOmics.Ai Pty Ltd, Sydney, NSW, Australia","Programs in Metabolism and Medical Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA","School of Biotechnology and Biomolecular Sciences, University of New South Wales (UNSW Sydney), Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Harvard Medical School, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Division of Genetics and Genomics, Boston Children\u2019s Hospital, Boston, MA, USA","institution_ids":["https://openalex.org/I1288882113"]},{"raw_affiliation_string":"OmniOmics.Ai Pty Ltd, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Programs in Metabolism and Medical Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"School of Biotechnology and Biomolecular Sciences, University of New South Wales (UNSW Sydney), Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004057129","display_name":"Derong Liu","orcid":"https://orcid.org/0000-0003-3715-4778"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Derong Liu","raw_affiliation_strings":["School of Computer Science, The University of Sydney, Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045843249","display_name":"Yuk Ying Chung","orcid":"https://orcid.org/0000-0002-3158-9650"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Vera Chung","raw_affiliation_strings":["School of Computer Science, The University of Sydney, Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005831779","display_name":"Ali Anaissi","orcid":"https://orcid.org/0000-0002-8864-0314"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ali Anaissi","raw_affiliation_strings":["School of Computer Science, The University of Sydney, Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, The University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090363651","display_name":"Fatemeh Vafaee","orcid":"https://orcid.org/0000-0002-7521-2417"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Fatemeh Vafaee","raw_affiliation_strings":["OmniOmics.Ai Pty Ltd, Sydney, NSW, Australia","School of Biotechnology and Biomolecular Sciences, University of New South Wales (UNSW Sydney), Sydney, Australia","UNSW Data Science Hub, University of New South Wales (UNSW), Sydney, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"OmniOmics.Ai Pty Ltd, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"School of Biotechnology and Biomolecular Sciences, University of New South Wales (UNSW Sydney), Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]},{"raw_affiliation_string":"UNSW Data Science Hub, University of New South Wales (UNSW), Sydney, Australia","institution_ids":["https://openalex.org/I31746571"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":0.4331,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.59799371,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"56","issue":"7","first_page":"7263","last_page":"7278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.930899977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6763587594032288},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6494585275650024},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6319594383239746},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5566410422325134},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.552036702632904},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.4963286519050598},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4474753737449646},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.43791481852531433},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4049653708934784},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33258935809135437},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1666824221611023}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6763587594032288},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6494585275650024},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6319594383239746},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5566410422325134},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.552036702632904},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.4963286519050598},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4474753737449646},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.43791481852531433},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4049653708934784},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33258935809135437},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1666824221611023},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10462-022-10357-4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10462-022-10357-4","pdf_url":null,"source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1580018887","https://openalex.org/W1964940342","https://openalex.org/W1987329163","https://openalex.org/W2007439698","https://openalex.org/W2040895929","https://openalex.org/W2139399084","https://openalex.org/W2153655918","https://openalex.org/W2155632266","https://openalex.org/W2231058499","https://openalex.org/W2323326409","https://openalex.org/W2514448720","https://openalex.org/W2528543174","https://openalex.org/W2559588208","https://openalex.org/W2790756470","https://openalex.org/W2796170779","https://openalex.org/W2817817898","https://openalex.org/W2894687190","https://openalex.org/W2909240409","https://openalex.org/W2927507212","https://openalex.org/W2951506174","https://openalex.org/W2971653850","https://openalex.org/W2979464975","https://openalex.org/W2982474113","https://openalex.org/W2989716250","https://openalex.org/W2990285535","https://openalex.org/W3000145506","https://openalex.org/W3013462789","https://openalex.org/W3092982430","https://openalex.org/W3105982350","https://openalex.org/W3137852009","https://openalex.org/W3188155461","https://openalex.org/W3192425214","https://openalex.org/W4205529833","https://openalex.org/W4210840193","https://openalex.org/W4282923574","https://openalex.org/W6600025664"],"related_works":["https://openalex.org/W2090763504","https://openalex.org/W4293226380","https://openalex.org/W148178222","https://openalex.org/W2104657898","https://openalex.org/W1948992892","https://openalex.org/W1886884218","https://openalex.org/W1910826599","https://openalex.org/W1980100242","https://openalex.org/W2530420969","https://openalex.org/W2051187167"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
