{"id":"https://openalex.org/W4313321714","doi":"https://doi.org/10.1007/s10462-022-10350-x","title":"Artificial intelligence for template-free protein structure prediction: a comprehensive review","display_name":"Artificial intelligence for template-free protein structure prediction: a comprehensive review","publication_year":2022,"publication_date":"2022-12-17","ids":{"openalex":"https://openalex.org/W4313321714","doi":"https://doi.org/10.1007/s10462-022-10350-x"},"language":"en","primary_location":{"id":"doi:10.1007/s10462-022-10350-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10462-022-10350-x","pdf_url":null,"source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029120894","display_name":"M. M. Mohamed Mufassirin","orcid":"https://orcid.org/0000-0002-3141-7023"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I181412377","display_name":"South Eastern University of Sri Lanka","ror":"https://ror.org/007vzmy24","country_code":"LK","type":"education","lineage":["https://openalex.org/I181412377"]}],"countries":["AU","LK"],"is_corresponding":false,"raw_author_name":"M. M. Mohamed Mufassirin","raw_affiliation_strings":["Department of Computer Science, South Eastern University of Sri Lanka, Main Street, Sammanthurai, Ampara, Eastern Province, 32200, Sri Lanka","School of ICT, Griffith University, 170 Kessels Road, Nathan, Brisbane, QLD, 4111, Australia"],"raw_orcid":"https://orcid.org/0000-0002-3141-7023","affiliations":[{"raw_affiliation_string":"Department of Computer Science, South Eastern University of Sri Lanka, Main Street, Sammanthurai, Ampara, Eastern Province, 32200, Sri Lanka","institution_ids":["https://openalex.org/I181412377"]},{"raw_affiliation_string":"School of ICT, Griffith University, 170 Kessels Road, Nathan, Brisbane, QLD, 4111, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086354302","display_name":"M. A. Hakim Newton","orcid":"https://orcid.org/0000-0001-5655-0683"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I78757542","display_name":"University of Newcastle Australia","ror":"https://ror.org/00eae9z71","country_code":"AU","type":"education","lineage":["https://openalex.org/I78757542"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"M. A. Hakim Newton","raw_affiliation_strings":["IIIS, Griffith University, 170 Kessels Road, Nathan, Brisbane, 4111, Queensland, Australia","School of Information and Physical Sciences, The University of Newcastle, University Drive, Callaghan, NSW, 2308, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IIIS, Griffith University, 170 Kessels Road, Nathan, Brisbane, 4111, Queensland, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"School of Information and Physical Sciences, The University of Newcastle, University Drive, Callaghan, NSW, 2308, Australia","institution_ids":["https://openalex.org/I78757542"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038675407","display_name":"Abdul Sattar","orcid":"https://orcid.org/0000-0002-2567-2052"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Abdul Sattar","raw_affiliation_strings":["IIIS, Griffith University, 170 Kessels Road, Nathan, Brisbane, 4111, Queensland, Australia","School of ICT, Griffith University, 170 Kessels Road, Nathan, Brisbane, QLD, 4111, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IIIS, Griffith University, 170 Kessels Road, Nathan, Brisbane, 4111, Queensland, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"School of ICT, Griffith University, 170 Kessels Road, Nathan, Brisbane, QLD, 4111, Australia","institution_ids":["https://openalex.org/I11701301"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":null,"fwci":1.2536,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.79145919,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"56","issue":"8","first_page":"7665","last_page":"7732"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7727004289627075},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.6072060465812683},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6022491455078125},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.397916704416275},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.29547804594039917},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.06599721312522888}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7727004289627075},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.6072060465812683},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6022491455078125},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.397916704416275},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.29547804594039917},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.06599721312522888},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/s10462-022-10350-x","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10462-022-10350-x","pdf_url":null,"source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/420663","is_oa":false,"landing_page_url":"http://hdl.handle.net/10072/420663","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:uon:53625","is_oa":false,"landing_page_url":"http://hdl.handle.net/1959.13/1493711","pdf_url":null,"source":{"id":"https://openalex.org/S4377196471","display_name":"NOVA (University of Newcastle Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78757542","host_organization_name":"University of Newcastle Australia","host_organization_lineage":["https://openalex.org/I78757542"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4526071058","display_name":"Searching for near-exact protein models","funder_award_id":"DP180102727","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"}],"funders":[{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":287,"referenced_works":["https://openalex.org/W59526888","https://openalex.org/W113688923","https://openalex.org/W295995462","https://openalex.org/W297821776","https://openalex.org/W612804946","https://openalex.org/W753125383","https://openalex.org/W1043441762","https://openalex.org/W1433532214","https://openalex.org/W1540530720","https://openalex.org/W1549998098","https://openalex.org/W1561877279","https://openalex.org/W1562788212","https://openalex.org/W1580401926","https://openalex.org/W1596947964","https://openalex.org/W1913397490","https://openalex.org/W1964655247","https://openalex.org/W1967286848","https://openalex.org/W1970157506","https://openalex.org/W1974130578","https://openalex.org/W1975017420","https://openalex.org/W1981264193","https://openalex.org/W1985458728","https://openalex.org/W1995017064","https://openalex.org/W1997870466","https://openalex.org/W2002129624","https://openalex.org/W2004461664","https://openalex.org/W2004617458","https://openalex.org/W2008505479","https://openalex.org/W2008545402","https://openalex.org/W2008708467","https://openalex.org/W2009837779","https://openalex.org/W2010420009","https://openalex.org/W2010570026","https://openalex.org/W2012907468","https://openalex.org/W2013425283","https://openalex.org/W2015403140","https://openalex.org/W2017285544","https://openalex.org/W2017421343","https://openalex.org/W2020530495","https://openalex.org/W2022713619","https://openalex.org/W2033570280","https://openalex.org/W2033906450","https://openalex.org/W2037312364","https://openalex.org/W2037589601","https://openalex.org/W2043010716","https://openalex.org/W2044145005","https://openalex.org/W2045216976","https://openalex.org/W2045777307","https://openalex.org/W2046371018","https://openalex.org/W2046609661","https://openalex.org/W2047774682","https://openalex.org/W2051210555","https://openalex.org/W2051872583","https://openalex.org/W2057289558","https://openalex.org/W2059117301","https://openalex.org/W2060259273","https://openalex.org/W2061042699","https://openalex.org/W2076724084","https://openalex.org/W2077549107","https://openalex.org/W2080382112","https://openalex.org/W2088025175","https://openalex.org/W2088348547","https://openalex.org/W2088608587","https://openalex.org/W2088828240","https://openalex.org/W2090525734","https://openalex.org/W2093446335","https://openalex.org/W2095673458","https://openalex.org/W2101052277","https://openalex.org/W2101712920","https://openalex.org/W2104332287","https://openalex.org/W2104467962","https://openalex.org/W2104765598","https://openalex.org/W2106732857","https://openalex.org/W2107265251","https://openalex.org/W2108101947","https://openalex.org/W2108349424","https://openalex.org/W2110483430","https://openalex.org/W2114340287","https://openalex.org/W2117451312","https://openalex.org/W2118233996","https://openalex.org/W2118387386","https://openalex.org/W2119510132","https://openalex.org/W2119550029","https://openalex.org/W2119843684","https://openalex.org/W2120230374","https://openalex.org/W2120796076","https://openalex.org/W2123696579","https://openalex.org/W2124848384","https://openalex.org/W2125910575","https://openalex.org/W2126677658","https://openalex.org/W2130479394","https://openalex.org/W2131474431","https://openalex.org/W2132262459","https://openalex.org/W2136567909","https://openalex.org/W2136799255","https://openalex.org/W2137566700","https://openalex.org/W2140574901","https://openalex.org/W2140673705","https://openalex.org/W2141395331","https://openalex.org/W2145778523","https://openalex.org/W2145991251","https://openalex.org/W2147209844","https://openalex.org/W2148081044","https://openalex.org/W2150705899","https://openalex.org/W2151581834","https://openalex.org/W2152107372","https://openalex.org/W2153153865","https://openalex.org/W2154106236","https://openalex.org/W2155500844","https://openalex.org/W2155636968","https://openalex.org/W2157437977","https://openalex.org/W2158562723","https://openalex.org/W2158714788","https://openalex.org/W2160784118","https://openalex.org/W2161151688","https://openalex.org/W2164583490","https://openalex.org/W2165371996","https://openalex.org/W2166701319","https://openalex.org/W2168310604","https://openalex.org/W2171546617","https://openalex.org/W2171559274","https://openalex.org/W2201713963","https://openalex.org/W2237984721","https://openalex.org/W2294585778","https://openalex.org/W2323927982","https://openalex.org/W2326290698","https://openalex.org/W2327067894","https://openalex.org/W2333360787","https://openalex.org/W2337606518","https://openalex.org/W2342838938","https://openalex.org/W2344557669","https://openalex.org/W2344850686","https://openalex.org/W2395270384","https://openalex.org/W2400474785","https://openalex.org/W2409640637","https://openalex.org/W2411608355","https://openalex.org/W2419194917","https://openalex.org/W2462800345","https://openalex.org/W2532298225","https://openalex.org/W2538176089","https://openalex.org/W2540069603","https://openalex.org/W2554617421","https://openalex.org/W2555870966","https://openalex.org/W2559617060","https://openalex.org/W2565608178","https://openalex.org/W2590489721","https://openalex.org/W2600704321","https://openalex.org/W2606439133","https://openalex.org/W2606769899","https://openalex.org/W2607268717","https://openalex.org/W2609811411","https://openalex.org/W2610313513","https://openalex.org/W2614573232","https://openalex.org/W2622769796","https://openalex.org/W2734712782","https://openalex.org/W2739202500","https://openalex.org/W2747118545","https://openalex.org/W2748374366","https://openalex.org/W2753650356","https://openalex.org/W2757160879","https://openalex.org/W2768798866","https://openalex.org/W2772524698","https://openalex.org/W2778001245","https://openalex.org/W2780845733","https://openalex.org/W2781939187","https://openalex.org/W2783827472","https://openalex.org/W2783924029","https://openalex.org/W2789241652","https://openalex.org/W2790598736","https://openalex.org/W2791167534","https://openalex.org/W2791790018","https://openalex.org/W2793366908","https://openalex.org/W2801109052","https://openalex.org/W2802666861","https://openalex.org/W2808950571","https://openalex.org/W2849436992","https://openalex.org/W2886154121","https://openalex.org/W2890824192","https://openalex.org/W2891841439","https://openalex.org/W2894584887","https://openalex.org/W2898320067","https://openalex.org/W2900153762","https://openalex.org/W2900324779","https://openalex.org/W2901142372","https://openalex.org/W2902070830","https://openalex.org/W2903788372","https://openalex.org/W2904110477","https://openalex.org/W2905446269","https://openalex.org/W2905812122","https://openalex.org/W2906084236","https://openalex.org/W2912932504","https://openalex.org/W2928838901","https://openalex.org/W2929793715","https://openalex.org/W2937569020","https://openalex.org/W2941002594","https://openalex.org/W2941274045","https://openalex.org/W2942231644","https://openalex.org/W2944535254","https://openalex.org/W2949867299","https://openalex.org/W2950374603","https://openalex.org/W2950954328","https://openalex.org/W2951621517","https://openalex.org/W2951639995","https://openalex.org/W2952317511","https://openalex.org/W2956081200","https://openalex.org/W2960589734","https://openalex.org/W2963457143","https://openalex.org/W2965351431","https://openalex.org/W2966057938","https://openalex.org/W2967586821","https://openalex.org/W2967606876","https://openalex.org/W2967904513","https://openalex.org/W2968494487","https://openalex.org/W2968700072","https://openalex.org/W2969180072","https://openalex.org/W2969644707","https://openalex.org/W2969735716","https://openalex.org/W2970594786","https://openalex.org/W2971003495","https://openalex.org/W2971733377","https://openalex.org/W2972411752","https://openalex.org/W2983348255","https://openalex.org/W2987451562","https://openalex.org/W2994958577","https://openalex.org/W2996591847","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3000982932","https://openalex.org/W3003647270","https://openalex.org/W3006869563","https://openalex.org/W3011405967","https://openalex.org/W3012297767","https://openalex.org/W3013383818","https://openalex.org/W3014576393","https://openalex.org/W3018118966","https://openalex.org/W3021785094","https://openalex.org/W3035913543","https://openalex.org/W3042567394","https://openalex.org/W3042567612","https://openalex.org/W3048060386","https://openalex.org/W3048900928","https://openalex.org/W3092567562","https://openalex.org/W3093108887","https://openalex.org/W3099836851","https://openalex.org/W3100075733","https://openalex.org/W3106449773","https://openalex.org/W3109508638","https://openalex.org/W3118577024","https://openalex.org/W3119104463","https://openalex.org/W3120712761","https://openalex.org/W3123773263","https://openalex.org/W3128355392","https://openalex.org/W3132153121","https://openalex.org/W3132448805","https://openalex.org/W3136751755","https://openalex.org/W3146944767","https://openalex.org/W3152862263","https://openalex.org/W3158218950","https://openalex.org/W3158708384","https://openalex.org/W3160452636","https://openalex.org/W3161724381","https://openalex.org/W3162614523","https://openalex.org/W3164039183","https://openalex.org/W3171139884","https://openalex.org/W3178087467","https://openalex.org/W3178212622","https://openalex.org/W3183475563","https://openalex.org/W3183921815","https://openalex.org/W3193650118","https://openalex.org/W3198789071","https://openalex.org/W3201593137","https://openalex.org/W3209492740","https://openalex.org/W3209983558","https://openalex.org/W3212854871","https://openalex.org/W4205765055","https://openalex.org/W4206081925","https://openalex.org/W4210417748","https://openalex.org/W4220887157","https://openalex.org/W4240602849","https://openalex.org/W4246565613","https://openalex.org/W4247964656","https://openalex.org/W4249859807","https://openalex.org/W4281390806","https://openalex.org/W4281926540","https://openalex.org/W4285820186","https://openalex.org/W4296692553","https://openalex.org/W6684236658"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
