{"id":"https://openalex.org/W1999331622","doi":"https://doi.org/10.1007/s10462-005-9011-9","title":"Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences","display_name":"Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences","publication_year":2005,"publication_date":"2005-10-24","ids":{"openalex":"https://openalex.org/W1999331622","doi":"https://doi.org/10.1007/s10462-005-9011-9","mag":"1999331622"},"language":"en","primary_location":{"id":"doi:10.1007/s10462-005-9011-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10462-005-9011-9","pdf_url":null,"source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077269033","display_name":"Shaun Mahony","orcid":"https://orcid.org/0000-0002-2641-1807"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Shaun Mahony","raw_affiliation_strings":["National Centre for Biomedical Engineering Science, NUI Galway, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"National Centre for Biomedical Engineering Science, NUI Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005009833","display_name":"David A. Hendrix","orcid":"https://orcid.org/0000-0002-7285-1977"},"institutions":[{"id":"https://openalex.org/I4210109258","display_name":"Innovative Genomics Institute","ror":"https://ror.org/01r4tcq81","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191","https://openalex.org/I4210109258","https://openalex.org/I95457486"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Hendrix","raw_affiliation_strings":["Center for Integrative Genomics, University of California, Berkeley, CA, 94720, USA"],"affiliations":[{"raw_affiliation_string":"Center for Integrative Genomics, University of California, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I4210109258","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101903427","display_name":"Terry Smith","orcid":"https://orcid.org/0000-0002-4956-3299"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Terry J. Smith","raw_affiliation_strings":["National Centre for Biomedical Engineering Science, NUI Galway, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"National Centre for Biomedical Engineering Science, NUI Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035389230","display_name":"Aaron Golden","orcid":"https://orcid.org/0000-0001-8208-4292"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Aaron Golden","raw_affiliation_strings":["Department of Information Technology, NUI Galway, Galway, Ireland","National Centre for Biomedical Engineering Science, NUI Galway, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, NUI Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"National Centre for Biomedical Engineering Science, NUI Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077269033"],"corresponding_institution_ids":["https://openalex.org/I188760350"],"apc_list":{"value":2490,"currency":"EUR","value_usd":3090},"apc_paid":null,"fwci":0.755,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.68186727,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"24","issue":"3-4","first_page":"397","last_page":"413"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.8453347682952881},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6028479933738708},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.5714316964149475},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5337907075881958},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4530262351036072},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3920876979827881},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2895898222923279},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17093530297279358},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08050215244293213}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.8453347682952881},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6028479933738708},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.5714316964149475},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5337907075881958},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4530262351036072},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3920876979827881},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2895898222923279},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17093530297279358},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08050215244293213},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/s10462-005-9011-9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10462-005-9011-9","pdf_url":null,"source":{"id":"https://openalex.org/S122814990","display_name":"Artificial Intelligence Review","issn_l":"0269-2821","issn":["0269-2821","1573-7462"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Artificial Intelligence Review","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320861","display_name":"University of Galway","ror":"https://ror.org/03bea9k73"},{"id":"https://openalex.org/F4320321056","display_name":"Irish Research Council","ror":"https://ror.org/051xex213"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1580213736","https://openalex.org/W1592870802","https://openalex.org/W1679913846","https://openalex.org/W1969698218","https://openalex.org/W1998300401","https://openalex.org/W2005244073","https://openalex.org/W2025540189","https://openalex.org/W2028903194","https://openalex.org/W2039286232","https://openalex.org/W2045342295","https://openalex.org/W2048869777","https://openalex.org/W2056134190","https://openalex.org/W2073850887","https://openalex.org/W2093901628","https://openalex.org/W2106104287","https://openalex.org/W2117131721","https://openalex.org/W2166898290","https://openalex.org/W2168157737","https://openalex.org/W2169001593","https://openalex.org/W4213332169"],"related_works":["https://openalex.org/W2073661767","https://openalex.org/W2013003323","https://openalex.org/W1981076832","https://openalex.org/W2380185347","https://openalex.org/W2024773645","https://openalex.org/W2001717001","https://openalex.org/W2370034659","https://openalex.org/W2117168988","https://openalex.org/W2103777723","https://openalex.org/W2610941444"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
