{"id":"https://openalex.org/W4406730576","doi":"https://doi.org/10.1007/s10278-025-01408-7","title":"How to Efficiently Annotate Images for Best-Performing Deep Learning-Based Segmentation Models: An Empirical Study with Weak and Noisy Annotations and Segment Anything Model","display_name":"How to Efficiently Annotate Images for Best-Performing Deep Learning-Based Segmentation Models: An Empirical Study with Weak and Noisy Annotations and Segment Anything Model","publication_year":2025,"publication_date":"2025-01-22","ids":{"openalex":"https://openalex.org/W4406730576","doi":"https://doi.org/10.1007/s10278-025-01408-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/39843720"},"language":"en","primary_location":{"id":"doi:10.1007/s10278-025-01408-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10278-025-01408-7","pdf_url":null,"source":{"id":"https://openalex.org/S4393920007","display_name":"Journal of Imaging Informatics in Medicine","issn_l":"2948-2925","issn":["2948-2925","2948-2933"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging Informatics in Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12572411/pdf/10278_2025_Article_1408.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045944581","display_name":"Yixin Zhang","orcid":"https://orcid.org/0000-0002-3197-7151"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yixin Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA. yixin.zhang7@duke.edu","Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA. yixin.zhang7@duke.edu","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102608392","display_name":"Shen Zhao","orcid":"https://orcid.org/0009-0003-1307-7816"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shen Zhao","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058205569","display_name":"Hanxue Gu","orcid":"https://orcid.org/0000-0003-2622-753X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanxue Gu","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001300575","display_name":"Maciej A. Mazurowski","orcid":"https://orcid.org/0000-0003-4202-8602"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maciej A. Mazurowski","raw_affiliation_strings":["Department of Biostatistics & Bioinformatics, Duke University, Durham, NC, USA","Department of Computer Science, Duke University, Durham, NC, USA","Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA","Department of Radiology, Duke University, Durham, NC, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics & Bioinformatics, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Radiology, Duke University, Durham, NC, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5045944581"],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":null,"apc_paid":null,"fwci":6.3919,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.96004694,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"38","issue":"5","first_page":"3235","last_page":"3247"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11605","display_name":"Visual Attention and Saliency Detection","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10775","display_name":"Generative Adversarial Networks and Image Synthesis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7057751417160034},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6789155602455139},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6407519578933716},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5223751664161682},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4665778577327728},{"id":"https://openalex.org/keywords/empirical-research","display_name":"Empirical research","score":0.42060402035713196},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34354841709136963},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13679644465446472},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.07113981246948242}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7057751417160034},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6789155602455139},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6407519578933716},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5223751664161682},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4665778577327728},{"id":"https://openalex.org/C120936955","wikidata":"https://www.wikidata.org/wiki/Q2155640","display_name":"Empirical research","level":2,"score":0.42060402035713196},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34354841709136963},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13679644465446472},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.07113981246948242}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1007/s10278-025-01408-7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10278-025-01408-7","pdf_url":null,"source":{"id":"https://openalex.org/S4393920007","display_name":"Journal of Imaging Informatics in Medicine","issn_l":"2948-2925","issn":["2948-2925","2948-2933"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Imaging Informatics in Medicine","raw_type":"journal-article"},{"id":"pmid:39843720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39843720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of imaging informatics in medicine","raw_type":null},{"id":"pmh:oai:europepmc.org:11379784","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12572411","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12572411/pdf/10278_2025_Article_1408.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:11379784","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12572411","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12572411/pdf/10278_2025_Article_1408.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4406730576.pdf"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1676314349","https://openalex.org/W1901129140","https://openalex.org/W1981276685","https://openalex.org/W1991367009","https://openalex.org/W2110158442","https://openalex.org/W2124351162","https://openalex.org/W2124592697","https://openalex.org/W2221898772","https://openalex.org/W2312198368","https://openalex.org/W2337429362","https://openalex.org/W2412782625","https://openalex.org/W2507296351","https://openalex.org/W2552414813","https://openalex.org/W2560023338","https://openalex.org/W2737258237","https://openalex.org/W2798542376","https://openalex.org/W2807777479","https://openalex.org/W2871579310","https://openalex.org/W2895589541","https://openalex.org/W2910094941","https://openalex.org/W2956648669","https://openalex.org/W2963687373","https://openalex.org/W3012984837","https://openalex.org/W3014304846","https://openalex.org/W3035680157","https://openalex.org/W3107730255","https://openalex.org/W3129501203","https://openalex.org/W3132926949","https://openalex.org/W3152004749","https://openalex.org/W3170128766","https://openalex.org/W3171581326","https://openalex.org/W3177819996","https://openalex.org/W4234552385","https://openalex.org/W4240153047","https://openalex.org/W4283011659","https://openalex.org/W4312336332","https://openalex.org/W4312804044","https://openalex.org/W4313141979","https://openalex.org/W4313156423","https://openalex.org/W4322766079","https://openalex.org/W4386066564","https://openalex.org/W4390874575","https://openalex.org/W4391109864","https://openalex.org/W6758047254","https://openalex.org/W6851578965"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W2731899572","https://openalex.org/W4230611425","https://openalex.org/W4294635752","https://openalex.org/W4304166257","https://openalex.org/W4383066092","https://openalex.org/W3215138031","https://openalex.org/W4379231730","https://openalex.org/W4366307084"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
